View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8295_high_1 (Length: 684)

Name: NF8295_high_1
Description: NF8295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8295_high_1
NF8295_high_1
[»] chr2 (4 HSPs)
chr2 (287-671)||(41381971-41382355)
chr2 (19-202)||(41381700-41381883)
chr2 (588-655)||(43853134-43853201)
chr2 (23-79)||(43854448-43854504)
[»] chr6 (8 HSPs)
chr6 (305-668)||(8041735-8042098)
chr6 (305-668)||(7971590-7971953)
chr6 (294-668)||(8031856-8032230)
chr6 (41-202)||(7971285-7971446)
chr6 (41-202)||(8042267-8042428)
chr6 (450-658)||(7979303-7979511)
chr6 (46-202)||(8032363-8032519)
chr6 (44-117)||(7978221-7978294)
[»] scaffold0531 (2 HSPs)
scaffold0531 (294-668)||(3102-3476)
scaffold0531 (47-202)||(2589-2744)
[»] chr7 (1 HSPs)
chr7 (364-660)||(14198614-14198910)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 287 - 671
Target Start/End: Original strand, 41381971 - 41382355
Alignment:
287 ttgacatatataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggca 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
41381971 ttgacatatataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggttgggtagatgacacaatacaaattgagcagaggca 41382070  T
387 aagatcataatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaa 486  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
41382071 aagatcataatgaaaaagctcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaa 41382170  T
487 tgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaag 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41382171 tgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaag 41382270  T
587 acgttttcccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaaggataagtataatc 671  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
41382271 acgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgatccatgaaaggataagtataatc 41382355  T

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Target: chr2; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 41381700 - 41381883
Alignment:
19 agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41381700 agatgggattgtagattgaatttccaacaccacattgtgtcctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca 41381799  T
119 ctagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagcccaagcaattgcagagtaactg 202  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
41381800 ctagtcgtggctttgctagtatattgtacatttgcttgtactcccttgtgtacactaccaacccaagcaattgcagagtaactg 41381883  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 655
Target Start/End: Complemental strand, 43853201 - 43853134
Alignment:
588 cgttttcccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatga 655  Q
    |||||||| |||||||| |||||||| |||||||||||||| |  |||||||| ||||| ||||||||    
43853201 cgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatga 43853134  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 43854504 - 43854448
Alignment:
23 gggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaaca 79  Q
    |||||||| | |||||| ||||||||||||||||| || ||||||||||| ||||||    
43854504 gggattgttgcttgaatctccaacaccacattgtgtccagcataggcaaatgcaaca 43854448  T

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Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 305 - 668
Target Start/End: Complemental strand, 8042098 - 8041735
Alignment:
305 ggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaaa 404  Q
    |||||| || ||||| || ||||||||||  |||| |||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
8042098 ggacatgacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaag 8041999  T
405 ttcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgta 504  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || ||||    
8041998 ctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgta 8041899  T
505 ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||    
8041898 ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccat 8041799  T
605 ctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaaggataagtata 668  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||    
8041798 ctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaaggacaagtata 8041735  T

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Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 305 - 668
Target Start/End: Original strand, 7971590 - 7971953
Alignment:
305 ggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaaa 404  Q
    |||||| || ||||| || ||||||||||  |||| |||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
7971590 ggacatgacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaag 7971689  T
405 ttcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgta 504  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || ||||    
7971690 ctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgta 7971789  T
505 ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||    
7971790 ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccat 7971889  T
605 ctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaaggataagtata 668  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||    
7971890 ctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaagaacaagtata 7971953  T

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Target: chr6; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 294 - 668
Target Start/End: Complemental strand, 8032230 - 8031856
Alignment:
294 atataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatca 393  Q
    |||||||||| |||||| ||||||||||| || |||||||  |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||    
8032230 atataccaaatggacatgactgctgcaaccaaggatacaccggaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatca 8032131  T
394 taatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccac 493  Q
    |||||||| |  ||||||||||   ||||||||||| ||||| ||||||||| || ||  |||||||||||||||||||||||||||||||||||||  |    
8032130 taatgaaataggtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgtcgcc 8032031  T
494 cccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgtttt 593  Q
    |||||||| ||| | |||||||||||| | ||||||  | |  ||||||||||| |||||||||||||| || |||||||  ||| |||||| |||||||    
8032030 cccaacttctactataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgtttt 8031931  T
594 cccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaaggataagtata 668  Q
    ||||||| ||| |||||||||||||||||||||||||| || || ||||||||| ||||||| | || |||||||    
8031930 cccggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagtata 8031856  T

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Target: chr6; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 7971285 - 7971446
Alignment:
41 tccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtat 140  Q
    |||| |||||| ||||| || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||    
7971285 tccagcaccacgttgtgtccggcaaaggcaaatgcaacagagccaagtgcattaaagaaattaaagacagatcctgcagtagttgtagctttgctactat 7971384  T
141 attctacatttgcttgtactcccttgtgtacactaccagcccaagcaattgcagagtaactg 202  Q
    ||| ||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||    
7971385 attgtacattttctagtactcccttgtgtatactaccagcccaagcaattgtagagtaactg 7971446  T

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Target: chr6; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 8042428 - 8042267
Alignment:
41 tccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtat 140  Q
    |||| ||||||| |||| || ||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||| || ||||||||| |||    
8042428 tccagcaccacaatgtgtccagcaaaggcaaatgcaacagagccaagtgcattaaagaaataaaagacagatcctgcagtagttgtagctttgctactat 8042329  T
141 attctacatttgcttgtactcccttgtgtacactaccagcccaagcaattgcagagtaactg 202  Q
    ||| ||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||||    
8042328 attgtacattttctagtactcccttgtgtatactaccagcccaagcaattgtagagtaactg 8042267  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 450 - 658
Target Start/End: Original strand, 7979303 - 7979511
Alignment:
450 ttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcac 549  Q
    |||||||||||||  || || |||||||| || |||||||  || |||| || |||||||||||||||||||| ||||||  | |  ||||| ||||  |    
7979303 ttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcc 7979402  T
550 caaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgat 649  Q
    |||| |||||||| || |||||||  ||| ||||||  ||||||||||||||||| ||||||||||||||||||||||| |  |||||||  ||||||||    
7979403 caaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgat 7979502  T
650 ccatgaaag 658  Q
    |||||||||    
7979503 ccatgaaag 7979511  T

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Target: chr6; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 8032519 - 8032363
Alignment:
46 caccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattct 145  Q
    ||||||||| || || ||||||||||| |||||||| || ||||||||||||||||||||||| ||| ||||| || | || || |||||| |||||| |    
8032519 caccacattatgtccagcataggcaaatgcaacagagccgagtgcattaaagaaattaaagactgattctgcagtatttgtagccttgctactatattgt 8032420  T
146 acatttgcttgtactcccttgtgtacactaccagcccaagcaattgcagagtaactg 202  Q
    |||||| |||||||||||||||||||||||  || ||||||||||| ||| ||||||    
8032419 acattttcttgtactcccttgtgtacactagtagtccaagcaattgtagaataactg 8032363  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 7978221 - 7978294
Alignment:
44 aacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgc 117  Q
    |||||||||||||| || |||||||||||||||| ||  ||||||||||||||||| | |||||| | ||||||    
7978221 aacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc 7978294  T

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Target: scaffold0531 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 294 - 668
Target Start/End: Original strand, 3102 - 3476
Alignment:
294 atataccaaaaggacataactgctgcaacaaaagatacactagaaagggagttgaggtttggtagatgacacaatacaaattgagcagaggcaaagatca 393  Q
    |||||||||| |||||| |||||||| || |||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||    
3102 atataccaaatggacatgactgctgccaccaaagatacaccagaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatca 3201  T
394 taatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccac 493  Q
    |||||||| |  ||||||||||   ||||||||||||||||| ||||||||| || ||| ||| |||||||||||||||||||||||| ||||||| |||    
3202 taatgaaatatgtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgttcac 3301  T
494 cccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgtttt 593  Q
    |||||||| ||| |||||||||||||||| ||||||  | |  ||||||||||| |||||||| ||||| |||| |||||  ||  |||||| |||||||    
3302 cccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgtttt 3401  T
594 cccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaaggataagtata 668  Q
    || |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| | ||||||||||    
3402 ccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagtata 3476  T

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Target: scaffold0531; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 2589 - 2744
Alignment:
47 accacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattcta 146  Q
    ||||||||||| || ||||||||||| || | ||| |||||||||||||||||||||||||| ||| ||||    ||||| || || ||| |||||| ||    
2589 accacattgtgtccggcataggcaaacgcgatagagccaagtgcattaaagaaattaaagactgattctgcggccgtcgtagcgtttctactatattgta 2688  T
147 catttgcttgtactcccttgtgtacactaccagcccaagcaattgcagagtaactg 202  Q
    ||||| ||  ||||||||||||| |||   ||| ||||||||| | ||||||||||    
2689 cattttctattactcccttgtgtgcaccggcagtccaagcaatagtagagtaactg 2744  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 364 - 660
Target Start/End: Original strand, 14198614 - 14198910
Alignment:
364 acaatacaaattgagcagaggcaaagatcataatgaaaaaattcaatttgattggtttgcaacttggacacagtgtattgtgaaatttttgcaatgatgc 463  Q
    |||| ||||| ||| |||||||||| ||||| || ||| || |||||||||||  |||||||   | |||||  ||||  ||||| || ||||| |||      
14198614 acaagacaaagtgaacagaggcaaaaatcattataaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaagattt 14198713  T
464 acctccggtgaccatgtagacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttgg 563  Q
     |||||||| ||||||||||||||||  || || ||||  || | ||||||||| ||||  |||||  |||  || |||||||||||||| |||| |||     
14198714 tcctccggttaccatgtagacaatgttaacgccgacttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattga 14198813  T
564 cccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacaaggtgtagagagtgatgatccatgaaagga 660  Q
    |||| ||||| |||| |||| | |||||| || || ||||| ||||||||||||||||||||||| || ||||| |  ||||||| |||||| ||||    
14198814 cccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgccataacgtgtataatgtgatgaaccatgagagga 14198910  T

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