View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8295_low_3 (Length: 416)
Name: NF8295_low_3
Description: NF8295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8295_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 54868334 - 54868132
Alignment:
| Q |
20 |
atagtaatgaataatcgaatacttatgcttcacaaacaaaatagataattcatattccataannnnnnnnga-tacactaagaacagataaaagaaaccc |
118 |
Q |
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| T |
54868334 |
atagtaatgaataatcgaatacttatgcttcacaaacaaaatagataattcatattccataatttttttttaatacactaagaacagataaatgaaaccc |
54868235 |
T |
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| Q |
119 |
aaacaactttacttttctgtgtattttaaaaaagtagacacaaattaaagacaaattaagtagcagatgcatatatgatgaagaaagaaataacacagaa |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54868234 |
aaacaacttttcttttctgtgtattttaaaaaagtagacacaaattaaagacaaattaagtagcagatgcatatatgatgaagaaagaaataacacagaa |
54868135 |
T |
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| Q |
219 |
aat |
221 |
Q |
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||| |
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| T |
54868134 |
aat |
54868132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 218 - 402
Target Start/End: Complemental strand, 54868109 - 54867933
Alignment:
| Q |
218 |
aaatcaaaatgaattaaacaaagcacccccaaattaagccacaaaacagaacaatatatggatcgatgataatcaatgagaagtagtctgatccttgtga |
317 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
54868109 |
aaatgaaaatgaattaaacaaagcacccccaaa----gccacaaaacagaagaat----ggatcgatgataatcaatgagaagtagtctcatccttgtga |
54868018 |
T |
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| Q |
318 |
tcatgatcatgatcatgatcagtagcagtcttagggtgataaccaggaatcttctctttgatcttttccaatatacctttcttct |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54868017 |
tcatgatcatgatcatgatcagtagcagtcttagggtgataaccaggaatcttctctttgatcttttccaatatacctttcttct |
54867933 |
T |
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