View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_high_1 (Length: 773)
Name: NF8296_high_1
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 279112 - 279544
Alignment:
| Q |
16 |
tcttgtaatagaaattgttttggactagacaaaagtctagcctgccataaattagggctcgtttttacataggttcaagtgagtggaatcccc-ttctca |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
279112 |
tcttgtaatagaaattgttttggactaggcaaaagtctagcctgcaacaaattaaggctcgtttttacataggtccaagtgagtggaatcccccttctca |
279211 |
T |
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| Q |
115 |
ccttggattatctccatctcaatgaagcctcgtaatgtcatgtggctcataacggc-atcgtctactgcatttatggccaccattccataacggctgcct |
213 |
Q |
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|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||| ||||| |
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| T |
279212 |
ccttggatcctctctatctcaatgaagcctagtaatgtcatgtggctcataacggccatcatttaccgcatttatggccaccattccataacggttgcct |
279311 |
T |
|
| Q |
214 |
cttatccgaccattaattactacataaccgtctcctcaaccctatataaatagtcaaatcacaagtaggttaaaatacatgtagctttgaatcaataaca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
279312 |
cttatccgaccattaattactacataaccgtctcctcgaccatatataaatagtcaaatcacaagtaggttaaaatacatgtagctttgaatcaacaaca |
279411 |
T |
|
| Q |
314 |
aagtgaagtacgaacaaagaacaaataatgcgctttcacatactttgattgatatatgatttgaaaatgaaatatcctctctatgagagttggaattttg |
413 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279412 |
gagtgaagtacgaacaaagaacaaataatgcgttttcatatactttgattgatatatgatttgaaaatgaaatatcctctctatgagagttggaattttg |
279511 |
T |
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| Q |
414 |
gaaattattgcgtcaagttagacacaaactcat |
446 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
279512 |
gaaattattgtgtcaagttagacacaaactcat |
279544 |
T |
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