View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8296_high_4 (Length: 477)

Name: NF8296_high_4
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8296_high_4
NF8296_high_4
[»] chr1 (2 HSPs)
chr1 (1-456)||(36979725-36980172)
chr1 (382-447)||(28108178-28108244)
[»] chr7 (3 HSPs)
chr7 (354-448)||(2729785-2729879)
chr7 (369-419)||(5897602-5897652)
chr7 (390-444)||(28443765-28443819)
[»] chr3 (3 HSPs)
chr3 (358-418)||(39028189-39028249)
chr3 (392-430)||(51381055-51381093)
chr3 (354-430)||(54525003-54525079)
[»] chr6 (4 HSPs)
chr6 (358-447)||(33900099-33900188)
chr6 (358-433)||(27177029-27177104)
chr6 (358-430)||(10498119-10498191)
chr6 (390-446)||(33629460-33629516)
[»] chr2 (8 HSPs)
chr2 (370-447)||(29699507-29699584)
chr2 (354-448)||(27249739-27249833)
chr2 (390-436)||(5357560-5357606)
chr2 (383-444)||(3848151-3848212)
chr2 (354-419)||(29923870-29923935)
chr2 (354-430)||(11915387-11915463)
chr2 (392-448)||(25271846-25271902)
chr2 (354-413)||(12037358-12037417)
[»] chr8 (4 HSPs)
chr8 (354-418)||(31645172-31645236)
chr8 (390-448)||(5920766-5920824)
chr8 (354-430)||(42456844-42456920)
chr8 (390-430)||(41581146-41581186)
[»] chr4 (5 HSPs)
chr4 (354-417)||(45073262-45073325)
chr4 (354-447)||(9672177-9672270)
chr4 (358-447)||(21512084-21512173)
chr4 (354-448)||(24699347-24699441)
chr4 (394-447)||(12868532-12868585)
[»] chr5 (1 HSPs)
chr5 (358-430)||(9379273-9379345)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 36980172 - 36979725
Alignment:
Q  1 aggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataaaatttgttaactggacttaaatttcttattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  36980172 aggttatatcaattatataaatattttttcgtgcatgtctctaaaggcatgtatcatggcttttcataa--tttgttaactggacttaaatttcttattg 36980075  T
Q  101 taaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacttttttgtgtttgtaattgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          
T  36980074 taaggacttgtattatggttgatctttctatctggatcccactttgcatataaatgatgtaactatcatgttgtcgtaacatttttgtgtttgt------ 36979981  T
Q  201 tggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtggataccatagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979980 tggctggtttatatgagtgaaacactttaatgtaaggatagagtttattttgacattgtaattgtttcataagtattctctcatttgtggataccatagc 36979881  T
Q  301 atgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgatgatcatttacgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  36979880 atgcttttatctttggattgaccatttcaaatttaaaagtgacatgcaattttatggattttaatcggcggcaattaattgccgattaacatttacgtct 36979781  T
Q  401 ttttctggtgtgtttcagctttgttagaagcgtgaataacaattttcacaggcctt 456  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  36979780 ttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttcataggcctt 36979725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 28108178 - 28108244
Alignment:
Q  382 ccgatgatcatttacgtc-tttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    ||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||| ||||||||||    
T  28108178 ccgatgaacatttacgtcttttttctggtttgtttcagccttgttagaagtgtgaacaacaattttc 28108244  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 2729879 - 2729785
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 448  Q
    |||||||||||  || |||| |||| ||||||||  |||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||    
T  2729879 atggattttaactggtggcagttaactgccgatggacatttacgtctttttctgttgtgtttcagccttgttagaagtgtgaatatcaattttca 2729785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 5897652 - 5897602
Alignment:
Q  369 cggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagc 419  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  5897652 cggcaattaattgctgatgtgcatttacgtctttttctggtgtgtttcagc 5897602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 28443765 - 28443819
Alignment:
Q  390 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatt 444  Q
    ||||||||||||||||| |||||||||||| ||||| |||| ||||| |||||||    
T  28443765 catttacgtctttttctagtgtgtttcagccttgtttgaagtgtgaacaacaatt 28443819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 39028189 - 39028249
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcag 418  Q
    ||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  39028189 attttaaccggcggcagttaactgccgatgaacatttacgtctttttctggtgtgtttcag 39028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 51381055 - 51381093
Alignment:
Q  392 tttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  51381055 tttacgtctttttctggtgtgtttcagccttgtttgaag 51381093  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 54525003 - 54525079
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||| ||||| |||||||| |||| |||| ||   ||||||||  |||||||||||||||||||| || |||||||    
T  54525003 atggaatttaaccggcggcagttaactgccaatagacatttacgattttttctggtgtgtttcagccttcttagaag 54525079  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 33900188 - 33900099
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    ||||||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| || ||||| |||| || || ||||||||||    
T  33900188 attttaaccggcggcagttaactaccaatgagcatttacgtctttttctggtgtgtttcggcattgtttgaagtgtaaacaacaattttc 33900099  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 27177029 - 27177104
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgt 433  Q
    |||||||||||||||| |||| || |||||| |||||||||||||||||  |||||||||   |||||||||||||    
T  27177029 attttaatcggcggcagttaactgtcgatgaacatttacgtctttttctaatgtgtttcaatcttgttagaagcgt 27177104  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 10498191 - 10498119
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||||| ||| |||| |||| || |||||| |||||||||||||||||| ||||||||| |||| |||||||    
T  10498191 attttaaacggtggcagttaactgtcgatgaacatttacgtctttttctgatgtgtttcaactttattagaag 10498119  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 33629460 - 33629516
Alignment:
Q  390 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatttt 446  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | ||| |||||||||    
T  33629460 catttacgtctttttctgatgtgtttcagccttgttaaaagtgcgaacaacaatttt 33629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 29699584 - 29699507
Alignment:
Q  370 ggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||||| |||||||||   |||||| ||||||||    
T  29699584 ggcagttaactgccgatggacatttacgtctttttctggtgtgtttcagccttgttagaaatatgaataccaattttc 29699507  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 27249833 - 27249739
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 448  Q
    |||||||||||  ||||||| |||| ||||||||  ||||||| |||||||| ||||||||||||| ||||| |||| ||  | |||||||||||    
T  27249833 atggattttaacaggcggcagttaactgccgatggacatttacatctttttccggtgtgtttcagccttgtttgaagtgtatacaacaattttca 27249739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 5357606 - 5357560
Alignment:
Q  390 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaa 436  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||    
T  5357606 catttacgtctttttctagtgtgtttcagccttgttagaagtgtgaa 5357560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 3848151 - 3848212
Alignment:
Q  383 cgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatt 444  Q
    |||||| |||||| ||||||||||| ||||||||||||||  || ||| |||||||||||||    
T  3848151 cgatgaacatttatgtctttttctgatgtgtttcagctttcataaaagtgtgaataacaatt 3848212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 29923935 - 29923870
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagc 419  Q
    ||||||||||| |||||||| |||| || |||| | |||||| ||||||||||| |||||||||||    
T  29923935 atggattttaaccggcggcagttaactgtcgataaacatttatgtctttttctgttgtgtttcagc 29923870  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 11915463 - 11915387
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||||||||| |||| | | |||| || |||||| ||||||| | |||||||||||||||||||  ||||||||||    
T  11915463 atggattttaaccggcagtagttaactgtcgatgaacatttacatttttttctggtgtgtttcagtcttgttagaag 11915387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 25271846 - 25271902
Alignment:
Q  392 tttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 448  Q
    |||||||||||||||| ||||||||||| ||||| |||| || || |||||||||||    
T  25271846 tttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaacaattttca 25271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 12037358 - 12037417
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgt 413  Q
    ||||||||||| || ||| | |||| |||| |||| ||||||||||||||||||||||||    
T  12037358 atggattttaaccgacggtagttaactgccaatgaacatttacgtctttttctggtgtgt 12037417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 31645172 - 31645236
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcag 418  Q
    ||||||||||| || ||||| |||| |||||||| |||||||| || ||||||||||||||||||    
T  31645172 atggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Complemental strand, 5920824 - 5920766
Alignment:
Q  390 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 448  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||| |||||||||||    
T  5920824 catttacgtatttttctgctgtgttttagccttgttagaagtgtgaacaacaattttca 5920766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 42456920 - 42456844
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||||||||| || ||| | ||||||| |||||  || ||||||||||||||| ||| ||||||| ||||||||||    
T  42456920 atggattttaaccgacggtagttaattgtcgatggacaattacgtctttttctgatgtatttcagccttgttagaag 42456844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 41581146 - 41581186
Alignment:
Q  390 catttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  41581146 catttacgtctttttctagtgtgtttcagccttgtttgaag 41581186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 45073262 - 45073325
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttca 417  Q
    ||||||||||| |||||||| |||| ||||||||  ||||||| ||||||||| ||||||||||    
T  45073262 atggattttaaccggcggcagttaactgccgatggacatttacatctttttctagtgtgtttca 45073325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 447
Target Start/End: Original strand, 9672177 - 9672270
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    ||||||||||| || || || |||| | ||||||  ||||| |||||||||||| ||||||||||| |||||||||  ||||| | ||||||||    
T  9672177 atggattttaaccgacgacagttaactaccgatgggcattttcgtctttttctgatgtgtttcagcattgttagaactgtgaacatcaattttc 9672270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 447
Target Start/End: Original strand, 21512084 - 21512173
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    ||||||| |||| ||| |||| ||| ||||  |||||||||||||||||||||||||||| | |||||  ||| || || ||||||||||    
T  21512084 attttaaccggctgcagttaactgctgatggacatttacgtctttttctggtgtgtttcatccttgtttaaagtgtcaacaacaattttc 21512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 24699441 - 24699347
Alignment:
Q  354 atggattttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca 448  Q
    |||||||||||  ||||||| |||| || |||||  |||||||||||||||||||| ||||| |||  |||| |||  || || |||||||||||    
T  24699441 atggattttaactggcggcagttaactggcgatggacatttacgtctttttctggtatgttttagccctgtttgaattgtaaacaacaattttca 24699347  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Original strand, 12868532 - 12868585
Alignment:
Q  394 tacgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc 447  Q
    ||||| |||| ||||||||||| ||||||||||||||  |||| ||||||||||    
T  12868532 tacgtgttttactggtgtgttttagctttgttagaagtatgaacaacaattttc 12868585  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 9379273 - 9379345
Alignment:
Q  358 attttaatcggcggcaattaattgccgatgatcatttacgtctttttctggtgtgtttcagctttgttagaag 430  Q
    ||||||| |||||||| ||||||  ||||||  ||||| ||||||||||||||| ||||||| || |||||||    
T  9379273 attttaaccggcggcagttaattatcgatgagaatttatgtctttttctggtgtatttcagccttcttagaag 9379345  T

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