View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8296_high_5 (Length: 421)

Name: NF8296_high_5
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8296_high_5
NF8296_high_5
[»] chr6 (35 HSPs)
chr6 (19-411)||(26876565-26876957)
chr6 (311-382)||(26659009-26659080)
chr6 (311-382)||(26764980-26765051)
chr6 (306-409)||(26851535-26851638)
chr6 (306-400)||(26805538-26805632)
chr6 (306-400)||(26952621-26952715)
chr6 (306-398)||(26649490-26649585)
chr6 (306-398)||(26755458-26755553)
chr6 (315-400)||(26887808-26887893)
chr6 (311-400)||(27590184-27590273)
chr6 (311-383)||(28789399-28789471)
chr6 (306-392)||(26061590-26061674)
chr6 (306-392)||(26081560-26081644)
chr6 (311-397)||(27657795-27657882)
chr6 (292-386)||(26826911-26827005)
chr6 (306-400)||(27715550-27715644)
chr6 (311-400)||(31287600-31287692)
chr6 (311-387)||(26626158-26626237)
chr6 (311-387)||(26732135-26732214)
chr6 (311-387)||(25077042-25077118)
chr6 (311-391)||(26638429-26638512)
chr6 (311-391)||(26744395-26744478)
chr6 (306-398)||(27662422-27662517)
chr6 (311-400)||(27674613-27674702)
chr6 (311-351)||(27528711-27528751)
chr6 (311-383)||(28795423-28795495)
chr6 (291-386)||(25491184-25491279)
chr6 (308-351)||(27425029-27425072)
chr6 (311-400)||(27681973-27682062)
chr6 (312-400)||(26962114-26962202)
chr6 (311-382)||(28246414-28246485)
chr6 (311-400)||(27608165-27608257)
chr6 (311-392)||(28142674-28142755)
chr6 (347-391)||(26808488-26808532)
chr6 (322-382)||(28525284-28525344)
[»] chr4 (7 HSPs)
chr4 (306-400)||(18696500-18696594)
chr4 (288-400)||(18652551-18652669)
chr4 (288-400)||(18676633-18676751)
chr4 (308-351)||(18076483-18076526)
chr4 (306-382)||(18686694-18686770)
chr4 (306-382)||(18721165-18721241)
chr4 (306-400)||(18728590-18728690)
[»] chr1 (4 HSPs)
chr1 (311-400)||(265380-265469)
chr1 (306-398)||(28124681-28124773)
chr1 (292-382)||(26139022-26139112)
chr1 (300-398)||(28129706-28129804)
[»] scaffold0419 (1 HSPs)
scaffold0419 (311-383)||(10549-10621)
[»] scaffold0277 (2 HSPs)
scaffold0277 (311-383)||(1762-1834)
scaffold0277 (311-383)||(10728-10800)
[»] scaffold0349 (1 HSPs)
scaffold0349 (306-400)||(16301-16395)
[»] chr8 (1 HSPs)
chr8 (311-385)||(29270891-29270965)
[»] scaffold0003 (1 HSPs)
scaffold0003 (308-351)||(62291-62334)
[»] chr2 (1 HSPs)
chr2 (306-389)||(17990186-17990269)
[»] scaffold0038 (1 HSPs)
scaffold0038 (311-382)||(46576-46647)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 26876957 - 26876565
Alignment:
Q  19 ctaatctcatcctcgcttggattcaatgacctccctaacaacttaagctccacataaatccattcattttctaacagtacttcctccagttcacaaacga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876957 ctaatctcatcctcgcttggattcaatgacctccctaacaacttaagctccacataaatccattcattttctaacagtacttcctccagttcacaaacga 26876858  T
Q  119 gtttcccgggataatcttggctatatagtctaatattttcttccaatcccaaatcaaatagacatgtatgattcggttcaaagcggaaagggcaacaacg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876857 gtttcccgggataatcttggctatatagtctaatattttcttccaatctcaaatcaaatagacatgtatgattcggttcaaagcggaaagggcaacaacg 26876758  T
Q  219 catcaaacaatattcacagccattgacaaacaaattgactcttacgctaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggatc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876757 catcaaacaatattcacagccattgacaaacaaattgactcttacgttaatcacatcattacaaaatccaagaagaacaatagaacgtataaaagggatc 26876658  T
Q  319 tttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaataatatag 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26876657 tttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatatag 26876565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 26659080 - 26659009
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26659080 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 26765051 - 26764980
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||| ||||    
T  26765051 aagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 26851638 - 26851535
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaata 405  Q
    |||| ||||||||||||||||||||||||| |||||||| | | || || ||||||| | |||||| ||||||||||| ||||||||| |||| | ||||    
T  26851638 tatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatcccttctgttccgcttggcaaaata 26851539  T
Q  406 atat 409  Q
    ||||    
T  26851538 atat 26851535  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 26805632 - 26805538
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  26805632 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 26805538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 26952715 - 26952621
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||| ||||||||||| |||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||||||||||||||||  ||||||||    
T  26952715 tatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttggga 26952621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 26649585 - 26649490
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgg 398  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| ||||||||||    
T  26649585 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttgg 26649490  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 26755553 - 26755458
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgt---gatttggtgttggaaccagtctggaatcccctctgttccgtttgg 398  Q
    |||| ||||||| |||||||||||||| ||||||||||| | |||| |   ||||||||||| |||||| ||||||||||||||| ||||||||||    
T  26755553 tatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttgg 26755458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 26887893 - 26887808
Alignment:
Q  315 gatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    ||||| |||||||||||||||||||| ||| |||||| || ||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  26887893 gatctctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttggga 26887808  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 27590184 - 27590273
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  27590184 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 27590273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 28789471 - 28789399
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 383  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28789471 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28789399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 26061674 - 26061590
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 392  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26061674 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26061590  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 26081644 - 26081560
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 392  Q
    |||| ||||||| | |||||||||||||||| |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||    
T  26081644 tatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctctgttcc 26081560  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 27657795 - 27657882
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgt-cccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttg 397  Q
    |||||||||||||||||||||||||||||||||| | | ||| |||||||||| | | |||| ||||||||||||||| || ||||||    
T  27657795 aagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctcttttacgtttg 27657882  T

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Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 26827005 - 26826911
Alignment:
Q  292 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 386  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||| | |||  || ||||||| |  ||||  ||||||||||||||    
T  26827005 agaataatagaacgtatagaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccctc 26826911  T

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Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 27715550 - 27715644
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    
T  27715550 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttggga 27715644  T

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Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 400
Target Start/End: Complemental strand, 31287692 - 31287600
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    ||||||||||||||||||||||||||| |||||   |||||||| |||||||||| |  ||||| | ||||||||| |||||||| |||||||    
T  31287692 aagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttggga 31287600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 26626237 - 26626158
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctct 387  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| |||||||||||||||    
T  26626237 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26626158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 26732214 - 26732135
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctct 387  Q
    |||||||||||||||||||||||||||||||||   | |||||| ||||||| || | |||||| |||||||||||||||    
T  26732214 aagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 387
Target Start/End: Complemental strand, 25077118 - 25077042
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctct 387  Q
    ||||||||||||| |||||||||||||||||||| | ||||   |||||||| | |||||| |||||||||||||||    
T  25077118 aagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctct 25077042  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 26638512 - 26638429
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 391  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| |||||||||    
T  26638512 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttc 26638429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 26744478 - 26744395
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgt---ttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 391  Q
    ||||||||||||||||||||||||||||||||||    |||||| || |||| || | |||||| ||||||||| |||||||||    
T  26744478 aagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttc 26744395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 27662422 - 27662517
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattg---tttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 398  Q
    |||| |||||||||||||||  ||||||||||||||||   | |||||| ||| ||| || | |||||| ||||||||||||||||||||| ||||    
T  27662422 tatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttccggttgg 27662517  T

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Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 27674613 - 27674702
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    ||||||| | |||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||| || |||||||||    
T  27674613 aagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttggga 27674702  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 27528711 - 27528751
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtccc 351  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27528711 aagggatctttttacgaaaccagaaagaaattgtgtgtccc 27528751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 28795495 - 28795423
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 383  Q
    ||||||||||||||| ||||||||| |||||||| | |||| || ||||||| | |||||| |||||||||||    
T  28795495 aagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 25491184 - 25491279
Alignment:
Q  291 aagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctc 386  Q
    |||||||||| ||| |||  ||||||| | ||||| ||||||||||||||||||  ||||| | |||||||| | |||||| |||||||| |||||    
T  25491184 aagaacaatacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctc 25491279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 27425029 - 27425072
Alignment:
Q  308 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 351  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  27425029 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 27425072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 400
Target Start/End: Complemental strand, 27682062 - 27681973
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    ||||||| | |||||||||||||||||||||| |  ||||| || ||||||| |  ||||| ||||| ||||||||| |||| |||||||    
T  27682062 aagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttggga 27681973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 26962202 - 26962114
Alignment:
Q  312 agggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||||||||||| ||| |||||||||||| ||| | |||| |  ||||||| |  ||||| ||||||||||||||  ||||||||||||    
T  26962202 agggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccctcacttccgtttggga 26962114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 28246485 - 28246414
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28246485 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 27608165 - 27608257
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc---ctctgttccgtttggga 400  Q
    ||||||| | |||||||||||||||||||| |||  ||||| || ||||||| |  ||||| ||||| |||||   |||||||||||||||||    
T  27608165 aagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccctgctctgttccgtttggga 27608257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 28142755 - 28142674
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttcc 392  Q
    |||||| ||||| |||||||||||||| ||||| | ||||| || ||||||| |  ||||| ||||||||||  ||||||||    
T  28142755 aagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcctttctgttcc 28142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 26808532 - 26808488
Alignment:
Q  347 gtcccgtgatttggtgttggaaccagtctggaatcccctctgttc 391  Q
    ||||| |||||||||| | |||||| |||||||||||||||||||    
T  26808532 gtcccttgatttggtgctcgaaccaatctggaatcccctctgttc 26808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 28525344 - 28525284
Alignment:
Q  322 ttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  28525344 ttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatcc 28525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 18696500 - 18696594
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||||||||||||||||||||    
T  18696500 tatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttggga 18696594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 400
Target Start/End: Original strand, 18652551 - 18652669
Alignment:
Q  288 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctgg------aatc 381  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| |||||      ||||    
T  18652551 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18652650  T
Q  382 ccctctgttccgtttggga 400  Q
    |||||||||||||||||||    
T  18652651 ccctctgttccgtttggga 18652669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 400
Target Start/End: Original strand, 18676633 - 18676751
Alignment:
Q  288 aagaagaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc----- 382  Q
    ||||| || |||||||  |||| |||||||||||||||| |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||         
T  18676633 aagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatc 18676732  T
Q  383 -cctctgttccgtttggga 400  Q
     ||||||||||||||||||    
T  18676733 tcctctgttccgtttggga 18676751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 18076526 - 18076483
Alignment:
Q  308 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 351  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  18076526 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 18076483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 18686694 - 18686770
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||| |||||||||||||||  |||||||||||||||| ||| ||| || |||| || | |||||| ||||||||||    
T  18686694 tatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 18721165 - 18721241
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || ||||||| | |||||| ||||||||||    
T  18721165 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 18728590 - 18728690
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc------cctctgttccgtttggg 399  Q
    |||| |||||||||||||||  ||||||||||||||||  || ||| || |||| || | |||||| ||||||||||      |||||||||||||||||    
T  18728590 tatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcctaatcacctctgttccgtttggg 18728689  T
Q  400 a 400  Q
    |    
T  18728690 a 18728690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 265380 - 265469
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| |  ||||| ||||| ||||||||||||||||||||||    
T  265380 aagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttggga 265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 28124681 - 28124773
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 398  Q
    |||| ||||||| | ||||||||||||||||||||  || ||| ||  | |||||||||||||||| || ||||||||||| |||||| ||||    
T  28124681 tatagaagggatttctttacgaaaccagaaagaaacagtatgttcccagttttggtgttggaaccaatcaggaatcccctcagttccggttgg 28124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 26139112 - 26139022
Alignment:
Q  292 agaacaatagaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||| |||||||| |||| ||||||| ||||||| |||||||||||||||||| || |||  |  |||||| | |||||| ||||||||||    
T  26139112 agaaaaatagaacttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcc 26139022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 28129706 - 28129804
Alignment:
Q  300 agaacgtataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgg 398  Q
    ||||| |||| ||||||| | ||||||||||||||||||||  || ||||||  | ||||||||| ||| || || ||||||||||| |||||| ||||    
T  28129706 agaacttatagaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtgttcgaaacaatcaggaatcccctcagttccggttgg 28129804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 10621 - 10549
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 383  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10621 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 1762 - 1834
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 383  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  1762 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 10728 - 10800
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatccc 383  Q
    |||||||||||||||||||||||||||||||||| | |||| || ||||||| | |||||| |||||||||||    
T  10728 aagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 16395 - 16301
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttggga 400  Q
    |||| ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| ||||| ||||||||||||||||    
T  16395 tatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttggga 16301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 29270891 - 29270965
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccct 385  Q
    ||||||| | ||||||||||||||||||||||||  ||||| || ||||||||| |||||| ||||| |||||||    
T  29270891 aagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccct 29270965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 62334 - 62291
Alignment:
Q  308 taaaagggatctttttacgaaaccagaaagaaattgtttgtccc 351  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  62334 taaaagggatctttttacgaaaccagaaagaaatggtgtgtccc 62291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 17990186 - 17990269
Alignment:
Q  306 tataaaagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgt 389  Q
    |||| ||||||| | |||||||||||||||||||||||| || ||| || ||||||| |  ||||| ||||||||||| |||||    
T  17990186 tatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcccttctgt 17990269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 46647 - 46576
Alignment:
Q  311 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcc 382  Q
    |||||| ||| ||||||||||| ||||||||||| |||||| || ||||||| |  ||||| ||||||||||    
T  46647 aagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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