View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_high_6 (Length: 366)
Name: NF8296_high_6
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 24397026 - 24396910
Alignment:
| Q |
233 |
ttcgagtgtaaaaaagatgtaaatgaaaactaagataaacaattgaaattgaattactacataataaaattgaattgcacacgctacataaatttcaaaa |
332 |
Q |
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| T |
24397026 |
ttcgagtgtaaaaaagatgtaaatgaaaactaagataaacaattgaaattgaattactacataataaaattgaattgcacacgctacataaatttcaaaa |
24396927 |
T |
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| Q |
333 |
ttcaagacagtcactat |
349 |
Q |
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| T |
24396926 |
ttcaaaacagtcactat |
24396910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 24400023 - 24399957
Alignment:
| Q |
234 |
tcgagtgtaaaaaagatgtaaatgaaaactaagataaacaattgaaattgaattactacataataaa |
300 |
Q |
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| T |
24400023 |
tcgagtgtaaagaagatgaaaatgaaaaccaaaatgaacaattgagactgaattattacagaataaa |
24399957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 10496408 - 10496339
Alignment:
| Q |
234 |
tcgagtgtaaaaaagatgtaaatgaaaactaagataaacaattgaaattgaattactacataataaaattg |
304 |
Q |
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| T |
10496408 |
tcgagtgtataacatatgaaaatgaaaacccagataaacaattg-aattgaattattacagaataaaattg |
10496339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 4932887 - 4932855
Alignment:
| Q |
5 |
aagaattccacaaacttccaaacccttacgtaa |
37 |
Q |
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| T |
4932887 |
aagaattccacaaacttcaaaacccttacgtaa |
4932855 |
T |
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