View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8296_low_10 (Length: 251)
Name: NF8296_low_10
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35165483 - 35165743
Alignment:
| Q |
1 |
aaactcttgtgttttaacatatcttctatataatttgatcaaacacactcaaaaagaatgtccatacagtactcaaaatcatgttttgaaacctcattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165483 |
aaactcttgtgttttaacatatcttctatataatttgatcaaacacactcaaaaagaatgtccatacagtactcaaaatcatgttttgaaacctcattgt |
35165582 |
T |
|
| Q |
101 |
aagaccaagcaaattgcttcattgatattt-------cttttgtc----------------tttcctcatcatttgtaccatataactatattttatgca |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165583 |
aagaccaagcaaattgcttcattgatatttcttttgtcttttgtcaaaagcttcaaaataatctcctcatcatttgtaccatataactatattttatgca |
35165682 |
T |
|
| Q |
178 |
tacaccaatgaatttctcgctttttcattttacatgtacttatcttcatgcttgtgcttct |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35165683 |
tacaccaatgaatttctcgctttttcattttacatgtacttatcttcatgcttgtgcttct |
35165743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44792147 - 44792008
Alignment:
| Q |
1 |
aaactcttgtgttttaacatatcttctatataatttgatcaaacacactcaaaaagaatgtccatacagtactcaaaatcatgttttgaaacctcattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44792147 |
aaactcttgtgttttaacatatcttctatataatttgatcaaacacactcaaaa-gaatgtccctacagtactcaaaatcatgttttgaaacctcattgt |
44792049 |
T |
|
| Q |
101 |
aagaccaagcaaattgcttcattgatatttcttttgtcttt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44792048 |
aagaccaagcaaattgcttcattgatatttcttttgtcttt |
44792008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 44791967 - 44791874
Alignment:
| Q |
145 |
catcatttgtaccatataactatattttatgcatacaccaatgaatttctcgctttttcattttacatgtacttatcttcatgcttgtgcttct |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44791967 |
catcatttgtaccatataactatattttatgcatacaccaatgaatttctcgctttttcattttacacgtacttatcttcatgcttgtgcttct |
44791874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University