View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_low_11 (Length: 242)
Name: NF8296_low_11
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_11 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 35165267 - 35165490
Alignment:
| Q |
19 |
ggatctgtcatgataaaacaagatgaaggcgaggaaactgctggagcattgcctgataaaacaagatgaaggcgatttgtaattttcctcatccattaaa |
118 |
Q |
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| T |
35165267 |
ggatctgtcatgataaaacaagatgaaggcgaggaaactgctggagcattgcctgataaaacaagatgaaggcgatttgtaattttcctcatccattaaa |
35165366 |
T |
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| Q |
119 |
tagtttttcaaccagtcttagttgtttatctttagcgatagaaactctcacatatcatttccattacgttttggttgtttcccatagtaagaccgaattt |
218 |
Q |
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| T |
35165367 |
tagtttttcaactagtcttagttgtttatctttagcgatagaaactctcacatatcatttccattacgttttggttgtttcccatagtaagaccgaattt |
35165466 |
T |
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| Q |
219 |
gatttccattacaattaaactctt |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
35165467 |
gatttccattacaattaaactctt |
35165490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 44792288 - 44792140
Alignment:
| Q |
95 |
ttgtaattttcctcatccattaaatagtttttcaaccagtcttagttgtttatctttagcgatagaaactctcacatatcatttccattacg-ttttggt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44792288 |
ttgtaattttcctcatccattaaatagtttttcaactagtcttagttgtttatctttagcgatagaaactctcacatatcatttccattacgtttttggt |
44792189 |
T |
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| Q |
194 |
tgtttcccatagtaagaccgaatttgatttccattacaattaaactctt |
242 |
Q |
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| T |
44792188 |
tgtttcccatagtaagaccgaatttgatttccattacaattaaactctt |
44792140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 44795480 - 44795425
Alignment:
| Q |
19 |
ggatctgtcatgataaaacaagatgaaggcgaggaaactgctggagcattgcctga |
74 |
Q |
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| T |
44795480 |
ggatctgtcatgataaaacaagatgaaggcgaggaaactgctgaagcattgcctga |
44795425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 39849421 - 39849475
Alignment:
| Q |
19 |
ggatctgtcatgataaaacaagatgaaggcgaggaaactgctggagcattgcctg |
73 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
39849421 |
ggatctctcgtgataaaacaagatgaaggcgaggaagctgcttgagcattgcctg |
39849475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 44829254 - 44829220
Alignment:
| Q |
95 |
ttgtaattttcctcatccattaaatagtttttcaa |
129 |
Q |
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| T |
44829254 |
ttgtaattttcttcatccattaaatagtttttcaa |
44829220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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