View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_low_2 (Length: 650)
Name: NF8296_low_2
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 2789888 - 2789593
Alignment:
| Q |
1 |
taacagagaacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789888 |
taacagagaacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaa |
2789789 |
T |
|
| Q |
101 |
actttgaaacagcctttggaagttccatggaaagattgtcagcaacttcctgtcaaatcaacaaacaatcaataaggcactcttggttgctcactctttt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
2789788 |
actttgaaacagcctttggcagttccatggaaagattgtcaacaacttcctgtcaaatcaacaaacaatcaataaggcactcttggtcgctcactctctt |
2789689 |
T |
|
| Q |
201 |
caatagaacttacataatattgtagcttggaagttaataggagggtttgaaatactttatttgagggcttatgacaaagtcacaaacactttcgta |
296 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789688 |
caatagaacttacatgatattgtagcttggaagttaataggagggtttgaaatactttatttgagggcttatgacaaagtcacaaacactttcgta |
2789593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 358 - 632
Target Start/End: Complemental strand, 2789599 - 2789323
Alignment:
| Q |
358 |
tttcataagctcgcttatataaacaatttataaagagcttgtgcagattttgcatcgataaactcctcgatggtacnnnnnnncgtatacataagctctt |
457 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2789599 |
tttcgtaagctcgcttatataaacaatttataaagagctcatgcagattttgcatcgataaactcctcgatggtacaaaaaaacgtatacataagctctt |
2789500 |
T |
|
| Q |
458 |
atatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtcaagagacggagaacaaat |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2789499 |
atatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtcaagagacgaagaacaaat |
2789400 |
T |
|
| Q |
558 |
gtatcgatgaatttc--acagagcttcaaatgcattgacttctttatgtccactgtctggatcagagagtgcagcat |
632 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2789399 |
gtatcgatgaatttcagacagagcttcaaatgcattgatttctttatgtccactgtctggatcagagagtgcagcat |
2789323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 2416795 - 2416966
Alignment:
| Q |
105 |
tgaaacagcctttggaagttccatggaaagattgtcagcaacttcctgtcaaatcaacaaacaatcaataaggcactcttggttgctcactcttttcaat |
204 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2416795 |
tgaaacagcctttggcagttcaatggaaagattgtcaacaacttcctgtcaaatcaacaaacaatcaataaggcactcttagttgctcactctcttcaat |
2416894 |
T |
|
| Q |
205 |
agaacttacataatattgtagcttggaagttaataggagggtttgaaatactttatttgagggcttatgaca |
276 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2416895 |
agaacttaaatgatattgtagcttgcaagttaataggagggtttgaaatactttatttgagggcttacgaca |
2416966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 441 - 631
Target Start/End: Original strand, 2416974 - 2417154
Alignment:
| Q |
441 |
cgtatacataagctcttatatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtca |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |
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| T |
2416974 |
cgtatacataagctcttatatgataaacacttac-gaaaaagtgtccaaataccctatgaaacatga--------ctgaaacggtaaacttgcctggtca |
2417064 |
T |
|
| Q |
541 |
agagacggagaacaaatgtatcgatgaatttc--acagagcttcaaatgcattgacttctttatgtccactgtctggatcagagagtgcagca |
631 |
Q |
| |
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|||||||||| |||| ||||| ||||| || |||||||||||| |||| |||||||||||||| || ||| |||||||||||| |||||| |
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| T |
2417065 |
agagacggag---aaatatatcggtgaatctcagacagagcttcaactgcactgacttctttatgttcattgtatggatcagagagagcagca |
2417154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2403729 - 2403834
Alignment:
| Q |
1 |
taacagagaacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaa |
100 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2403729 |
taacagagaataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagcaa |
2403828 |
T |
|
| Q |
101 |
actttg |
106 |
Q |
| |
|
|||||| |
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| T |
2403829 |
actttg |
2403834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 4244763 - 4244630
Alignment:
| Q |
27 |
tggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttgaaacagcctttggaagttcc |
126 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||||||||| | ||| |
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| T |
4244763 |
tggaccacattttgctatgaactgatcaatgatgctaattgccatgtccgaaaatttgcttgaaataccagcaaactttgaaacagcctttggcacttca |
4244664 |
T |
|
| Q |
127 |
atggaaagattgtcagcaacttcctgtcaaatca |
160 |
Q |
| |
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| ||||||| ||| |||||||||||||||||| |
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| T |
4244663 |
aaggaaagagcatcaacaacttcctgtcaaatca |
4244630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 590
Target Start/End: Complemental strand, 4244015 - 4243956
Alignment:
| Q |
533 |
cctggtcaagagacggagaacaaatgtatcgatgaatttc--acagagcttcaaatgcat |
590 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
4244015 |
cctggtcaagagacggggaacaaatgtatcgatgaatctctgacagagcttcaaatgcat |
4243956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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