View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_low_3 (Length: 507)
Name: NF8296_low_3
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 33901806 - 33902305
Alignment:
| Q |
19 |
gtgatgatggtcttcaatatactatatactggtttatttataaaatatatcaaatagctaggtatggattttaggaagaaagtttaca------------ |
106 |
Q |
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| T |
33901806 |
gtgatgatggtcttcaatatactatatactggtttatttataaaatatatcaaatagctaggtatggattttaggaagaaagtttactatttgtgatttt |
33901905 |
T |
|
| Q |
107 |
---cgactctgagagattaatctttcagcattctggacggcacatatatattaatattacaaatacaagtatagaagatttttaatgtactagtaattaa |
203 |
Q |
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| T |
33901906 |
acgcgactc-gagagattaatctttcagcattctggacggcacatatatattaatattacaaatacaagtatagaagatttttaatgtactagtaattaa |
33902004 |
T |
|
| Q |
204 |
ttaccagtggtgaaggagctgaacattttggctaaggcatcagataaatctttgtaggttttgtacattgtcaagtcaaccttacgaaggtaaggtgctc |
303 |
Q |
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| T |
33902005 |
ttaccagtggtgaaggagctgaacattttggctaaggcatcagataaatctttgtaggttttgtacattgtcaagtcaaccttacgaaggtaaggtgctc |
33902104 |
T |
|
| Q |
304 |
catccatggaaaccttaacaaa---agcagcagtagtgttacttgttgtcttctcagtgtcctcagtattgttaaccttttgtgccatcatgttcttcct |
400 |
Q |
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| T |
33902105 |
catccatggaaaccttaacaaaagcagcagcagtagtgttacttgttgtcttctcagtgtcctcagtattgttaaccttttgtgccatcatgttcttcct |
33902204 |
T |
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| Q |
401 |
gtatgacctcactggtggccaaccaactacttgagccctgaaatattattaatataatattcatttcaaatccctatataaatctcaattattcttctct |
500 |
Q |
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| T |
33902205 |
gtatgacctcactggtggccaaccaactacttgagccctgaaatattattaatataatattcatttcaaatccc--tataaatctcaattattcttttct |
33902302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 38529418 - 38529313
Alignment:
| Q |
205 |
taccagtggtgaaggagctgaacattttggctaaggcatcagataaatctttgtaggttttgtacattgtcaagtcaaccttacgaaggtaaggtgctcc |
304 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||| | | | ||| || ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
38529418 |
taccaatggtgaaggagctgaacattttgcctaaggaatcagaaagctgtgagtaacttgtgtacatcttcaagtcaaccttacgaaggtaaggagctcc |
38529319 |
T |
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| Q |
305 |
atccat |
310 |
Q |
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|||||| |
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| T |
38529318 |
atccat |
38529313 |
T |
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