View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_low_8 (Length: 348)
Name: NF8296_low_8
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 40351877 - 40351565
Alignment:
| Q |
21 |
atataaagcacttttgaa-tcatgtttgtgatgattcaaaggattcacaagcagattggaatggtgcagctcctctaaaagtctcagtac-gttgtgaag |
118 |
Q |
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| T |
40351877 |
atataaagcgcttttgaaatcatgtttgtgatgattcaagggattcacaagcagattggaatggtgcagctcctctaaaagtctcagtactgttgtgaag |
40351778 |
T |
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| Q |
119 |
aattaatgttgaaaaataagattttgacaaaagacaacttagttacaagaggcatcttgaacaaatttcaatactcatgttcgtttggttgtggaagaga |
218 |
Q |
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| T |
40351777 |
aattaatgttgaaaaataagattttgacaaaagacaacttagttacaagaggcatcttgaacaaatttcaatactcatgttcgtttggtcgtggaagaga |
40351678 |
T |
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| Q |
219 |
ggaacatgtttcacacttacacttcaaatgtatgctagcagtagaggtgtgaccagaaatcctaagatggttaaatttatattttgctatgcatatcaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40351677 |
ggaacatgtttcacacttacacttcaaatgtatgctagcagtagaggtgtgaccagaaatcctaagatggttaaatttatattttgctatgcatatcaca |
40351578 |
T |
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| Q |
319 |
gcgtagacgaatt |
331 |
Q |
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| T |
40351577 |
acgtagacgaatt |
40351565 |
T |
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