View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8296_low_9 (Length: 321)
Name: NF8296_low_9
Description: NF8296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8296_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29142598 - 29142322
Alignment:
| Q |
1 |
ttcttatatatgtttcatagttagtaatgaataagaaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagctgttagagtg |
100 |
Q |
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| T |
29142598 |
ttcttttatatgtttcatagttagtaatgaataagaaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagctgttagagtg |
29142499 |
T |
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| Q |
101 |
cctccaaaagccatgaagtgatcaacacaccttctactgcctcagtgaaaatgtttccttttgtattgacaataaatttaccttcaattttctgtgatga |
200 |
Q |
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| T |
29142498 |
cctccaaaagccatgaagtgatcaacacaccttctactgcctcagtgaaaatgtttccttttgtattgacaataaagttaccttcaattttctgtgatga |
29142399 |
T |
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| Q |
201 |
caaataaataactaaatatatggaaattgtgagtgcatgtatgatctaatatcttttatacatacatatattgtatg |
277 |
Q |
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| T |
29142398 |
caaataaataactaaatatatggaaattgtgagtgcatgtatgatctaatatcttttatacatacatatattgtatg |
29142322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 29569394 - 29569486
Alignment:
| Q |
36 |
aaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagctgttagagtgcctccaaaagcc--atgaagtgatcaac |
126 |
Q |
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| T |
29569394 |
aaatattttgagaaagaaaactgacaaaacttgtgatgacattgtttgtttcagctattagaatcccaccgaaagccatatgaagtgatcaac |
29569486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 29569622 - 29569660
Alignment:
| Q |
219 |
tatggaaattgtgagtgcatgtatgatctaatatctttt |
257 |
Q |
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| T |
29569622 |
tatggaaattgttagtgcatgtatgatctaatatctttt |
29569660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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