View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8297_high_1 (Length: 376)
Name: NF8297_high_1
Description: NF8297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8297_high_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 38483543 - 38483195
Alignment:
| Q |
28 |
gttcataatcataatgatcattgcttttcttactccgcaagattttatttaaatcatttgccatatgatgaaaaatatagcaaatacattcaggaataaa |
127 |
Q |
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| T |
38483543 |
gttcataatcataatgatcattgtttttcttactccgcaagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatacattcaggaataaa |
38483444 |
T |
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| Q |
128 |
acgtaaattcgcagactccccccaaatgagaagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgag |
227 |
Q |
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| T |
38483443 |
acgtaaattcgcagattccccccaaataaggagataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgag |
38483344 |
T |
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| Q |
228 |
acacttgacttaacatgcaagtaactgcaccagtaagtgtaattacgtagaagattcttccggaacgagcggattacagaggcatcgagggaatcgatgt |
327 |
Q |
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| T |
38483343 |
acacttgacttaacatgcaagtaactgcaccaggaagtgtaattacgtagaagattcttccggaacgagcggattacagaggcatcgagggaatcgatgt |
38483244 |
T |
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| Q |
328 |
tgtctggaggaggattgagacgcatctgagcattggcgagatggaggag |
376 |
Q |
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| T |
38483243 |
tgtctggaggaggattgagacgcatctgagcattggcgagatggaggag |
38483195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 30117655 - 30117591
Alignment:
| Q |
303 |
acagaggcatcgagggaatcgatgttgtctggaggaggattgagacgcatctgagcattggcgag |
367 |
Q |
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| T |
30117655 |
acagcggcgtcgagagtatcgatgttatccggcggcggagtgagacgcatctgagcattggcgag |
30117591 |
T |
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