View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8297_low_2 (Length: 349)
Name: NF8297_low_2
Description: NF8297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8297_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1083356 - 1083500
Alignment:
| Q |
1 |
aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat |
100 |
Q |
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| T |
1083356 |
aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat |
1083455 |
T |
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| Q |
101 |
caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa |
145 |
Q |
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| T |
1083456 |
caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa |
1083500 |
T |
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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 4015600 - 4015678
Alignment:
| Q |
271 |
ggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgt |
349 |
Q |
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| T |
4015600 |
ggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgt |
4015678 |
T |
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