View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8298_high_1 (Length: 607)
Name: NF8298_high_1
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_high_1 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 2 - 585
Target Start/End: Complemental strand, 51861436 - 51860853
Alignment:
| Q |
2 |
tcatcagttctgtattttaccttctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaataca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861436 |
tcatcagttctgtattttaccttctatagagttggctaagccttcaagctttgatatggtggatttatgaaggtcttcacctgaccagtttggaaataca |
51861337 |
T |
|
| Q |
102 |
aatagggtcatcacaagacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51861336 |
aatagggtcatcacaagacaaatagcaacgccgatgcatatggtagagacgcgatcttttgccaagctcaagatattatctacgcggtaacttgatacaa |
51861237 |
T |
|
| Q |
202 |
tcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcctacaaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861236 |
tcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcctacaaa |
51861137 |
T |
|
| Q |
302 |
accaaaagtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaaacttgttcggaaaatgtcaacaaacagatactc |
401 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51861136 |
accaaaggtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaaacttgttcggaaaatgtcaacaaacagatactc |
51861037 |
T |
|
| Q |
402 |
ctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatact |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51861036 |
ctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatact |
51860937 |
T |
|
| Q |
502 |
caattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataa |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51860936 |
caattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgcaatcataa |
51860853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 51821463 - 51821127
Alignment:
| Q |
16 |
ttttaccttctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcac |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||||| || |||||||||||||| |||| || |
|
|
| T |
51821463 |
ttttaccttctacagagttggctaagccttcaagttttgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataac |
51821364 |
T |
|
| Q |
116 |
aagacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaag |
215 |
Q |
| |
|
|||||||| | |||| ||||||||||| || |||| ||| |||||||||| |||||| |||||| || |||||||| |||||||| |||||||||||| |
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|
| T |
51821363 |
aagacaaagaccaacgccgatgcatatagttgagatgcgatcttttgccatcttcaagacattatcaacacggtaactcgatacaattatcaaattaaag |
51821264 |
T |
|
| Q |
216 |
gtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcctacaaaaccaaaagtgaaac |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| || ||| | ||||| | ||||||| | |||| || |||||||| |
|
|
| T |
51821263 |
gtcaagagaaataccataacaccatagtcataattcttcttgatatagggaatgaatctgacaaatgtagctgcagctcctgc-aaacaaacagtgaaac |
51821165 |
T |
|
| Q |
316 |
aatggttaagcaaaacactagggaagctccagccacaa |
353 |
Q |
| |
|
||||| ||| |||| | | ||||||||||||||||| |
|
|
| T |
51821164 |
aatggccaagaaaaatatttaggaagctccagccacaa |
51821127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 51851268 - 51850990
Alignment:
| Q |
18 |
ttaccttctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaa |
117 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51851268 |
ttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcacaa |
51851169 |
T |
|
| Q |
118 |
gacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggt |
217 |
Q |
| |
|
|||||| | |||| || |||||||||||| ||| ||| ||||| | | |||| ||| |||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
51851168 |
gacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgcggtaacttgatacaattatcaaattaaaggt |
51851069 |
T |
|
| Q |
218 |
caagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcct |
296 |
Q |
| |
|
||| |||||||||||||||||||| || || || |||||||||||||| ||||| || ||||| ||||| | ||||||| |
|
|
| T |
51851068 |
caacagaaatatcataacaccataatcgtagtttttctttatataagggatgaatctgacataggtagctgcagctcct |
51850990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 428 - 585
Target Start/End: Complemental strand, 51821040 - 51820883
Alignment:
| Q |
428 |
cttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgct |
527 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | |||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
51821040 |
cttacctaaaagaaaaaccgcagcaccaatgaaaattgctcgaaaaatctgatcagggttatctgcaagatactcaataaaaaatgccaacaatcctgct |
51820941 |
T |
|
| Q |
528 |
gacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataa |
585 |
Q |
| |
|
|| || || |||||||| || |||||||||| ||| || ||||||| |||||||| |
|
|
| T |
51820940 |
aacgaagttcccaatcctctgtttagtcctttgcttaaagtccctcctgcaatcataa |
51820883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 425 - 587
Target Start/End: Complemental strand, 51850577 - 51850415
Alignment:
| Q |
425 |
atgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatccc |
524 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | ||| ||||||| | ||||| |||||||||||||| ||| || |||||||| |||| |
|
|
| T |
51850577 |
atgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcct |
51850478 |
T |
|
| Q |
525 |
gctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataatc |
587 |
Q |
| |
|
||| ||| || || ||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
51850477 |
gctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataatc |
51850415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 49808560 - 49808733
Alignment:
| Q |
25 |
ctatagagttggctaagccttcaagcttcgatatggtggttttatgaaggtcttcacctgaccagtttggaaatacaaatagggtca-tcacaagacaaa |
123 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||| | ||||| || ||||| ||| |||||||||||| ||||||| | ||| | ||||||||| |
|
|
| T |
49808560 |
ctatagatttggctaagccatcaagctttgatatggtag-attatggagttcttccccttcccagtttggaaaaacaaataagctcattgccaagacaaa |
49808658 |
T |
|
| Q |
124 |
tagcaacaccgatgcatatggtagagacgcggtcttttgccaagctcaagatattatctacgcggtaacttgatacaat |
202 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||| | | | |||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
49808659 |
----gacacctatgcatatggtatagatgcgatctctcccgatgctcaagacattatcaacgcggtaaaatgatacaat |
49808733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 164 - 585
Target Start/End: Complemental strand, 5233 - 4812
Alignment:
| Q |
164 |
caagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataa |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5233 |
caagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataa |
5134 |
T |
|
| Q |
264 |
ggaatgaaccttacataagtagcagaagctcctacaaaaccaaaagtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5133 |
ggaatgaaccttacataagtagcagaagctcctacaaaaccaaaggtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaac |
5034 |
T |
|
| Q |
364 |
tcaaaacttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatac |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5033 |
tcaaaacttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatac |
4934 |
T |
|
| Q |
464 |
tgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcat |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4933 |
tgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcat |
4834 |
T |
|
| Q |
564 |
aaggttcctcctgaaatcataa |
585 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
4833 |
aaggttcctcctgcaatcataa |
4812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 4781693 - 4781785
Alignment:
| Q |
204 |
atcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaaccttacataagtagcagaagctcct |
296 |
Q |
| |
|
||||| ||||| |||| ||||||||| | | |||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
4781693 |
atcaagttaaaagtcatgagaaatataactagaccatagtcatagttcttctttatataaggaatgaacctcatataagtagctaaagctcct |
4781785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 4782223 - 4782279
Alignment:
| Q |
509 |
aaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataa |
565 |
Q |
| |
|
||||||||| ||||| ||| |||| ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
4782223 |
aaatgccaataatccagctaacagtgtccccaatcctctgttaagccctttgcataa |
4782279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 40634367 - 40634152
Alignment:
| Q |
68 |
atgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaagacaaatagcaacaccgatgcatatggtagagacgcggtcttttgccaag |
167 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| || || |||| | ||||||||| || || ||| |||||| ||| |||||| | ||||| |
|
|
| T |
40634367 |
atgaaggtcttcccctgaccaatttggaaatactaaaagactcatgaaaagacaaatggcgcagccaatggctatggtgaagaagcggtcatgtgccatc |
40634268 |
T |
|
| Q |
168 |
ctcaagatattatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaa |
267 |
Q |
| |
|
|||||| || ||| || |||||||| || ||| | | ||| || ||||| ||||| ||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
40634267 |
ttcaagacatgatcaacccggtaactcgaaacagttaacaagttgaaggttaagaggaatataaccacaccataatcataattcttctttatataaggaa |
40634168 |
T |
|
| Q |
268 |
tgaaccttacataagt |
283 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
40634167 |
tgaacctcatataagt |
40634152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 40645866 - 40645768
Alignment:
| Q |
176 |
attatctacgcggtaacttgatacaatcatcaaattaaaggtcaagagaaatatcataacaccatagtcataattcttctttatataaggaatgaacct |
274 |
Q |
| |
|
|||||| || ||||||||||| ||| | | |||||| || ||||||||||| || |||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
40645866 |
attatcaactcggtaacttgaaacagttaacaaattgaatgtcaagagaaagatagccacaccataatcataactcttctttatatagggaatgaacct |
40645768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 42454230 - 42454317
Alignment:
| Q |
23 |
ttctatagagttggctaagccttcaagcttcgatatggtgg----ttttatgaaggtcttcacctgaccagtttggaaatacaaatag |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| || ||| ||| |||||||||||||||| ||||| |
|
|
| T |
42454230 |
ttctatagagatggctaagccttcaagctttgatatggtggatttatttatgaacgttttcccctaaccagtttggaaatactaatag |
42454317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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