View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8298_high_2 (Length: 460)
Name: NF8298_high_2
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 21371370 - 21371792
Alignment:
| Q |
19 |
cacagatcgaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatttatcatggatatctttcttcacctgtttcgtatcgacat |
118 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21371370 |
cacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatttatcatggatatctttcttcacctgtttcgtctcgacat |
21371469 |
T |
|
| Q |
119 |
tcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371470 |
tcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatatt |
21371569 |
T |
|
| Q |
219 |
ctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371570 |
ctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtca |
21371669 |
T |
|
| Q |
319 |
tttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgttta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21371670 |
tttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgttta |
21371769 |
T |
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| Q |
419 |
atagtaaaattattggacttgct |
441 |
Q |
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| T |
21371770 |
atagtaaaattattggacttgct |
21371792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 21386187 - 21385765
Alignment:
| Q |
19 |
cacagatcgaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatttatcatggatatctttcttcacctgtttcgtatcgacat |
118 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21386187 |
cacaaatccaaagttttcaaactcttttcaatggctaaccctcacatgagaaccttccatttatcatggatatctttcttcacctgtttcgtctcgacat |
21386088 |
T |
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| Q |
119 |
tcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386087 |
tcgcggcagcacctttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatatt |
21385988 |
T |
|
| Q |
219 |
ctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385987 |
ctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtca |
21385888 |
T |
|
| Q |
319 |
tttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgttta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21385887 |
tttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgttta |
21385788 |
T |
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| Q |
419 |
atagtaaaattattggacttgct |
441 |
Q |
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||||||||||||||||||||||| |
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| T |
21385787 |
atagtaaaattattggacttgct |
21385765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 439
Target Start/End: Complemental strand, 48674302 - 48674195
Alignment:
| Q |
329 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaat |
428 |
Q |
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||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| || || |
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| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgagt---atgtttaataggaagat |
48674206 |
T |
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| Q |
429 |
tattggacttg |
439 |
Q |
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||||||||||| |
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| T |
48674205 |
tattggacttg |
48674195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 422
Target Start/End: Original strand, 36199810 - 36199965
Alignment:
| Q |
265 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
363 |
Q |
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||||||||||| || |||||||||||| | || ||||||| ||||||||| |||||| |||| ||||| |||| ||||||| ||||||||| |||||| |
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| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
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| Q |
364 |
ggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatag |
422 |
Q |
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||||| ||||| ||||| |||||||| || |||||| ||| ||||| | ||||||||| |
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| T |
36199907 |
ggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatag |
36199965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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