View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8298_high_3 (Length: 425)
Name: NF8298_high_3
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 3324127 - 3323719
Alignment:
| Q |
1 |
aaaagtttattggatgcatatcagatcatcttgaagaattaattaagcagaggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattg |
100 |
Q |
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| T |
3324127 |
aaaagtttattggatgcatatcagatcatcttgaagaattaattaagcagaggtgtgcttttcaattctcaaacatgaaaaaatagcatgataatcattg |
3324028 |
T |
|
| Q |
101 |
ttttgaatagcaactaaaaaatcatacctcttcttatttatataatatgaactaatttcttatatagtgaatgccctgaggaatgcaaggaagctatacc |
200 |
Q |
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| T |
3324027 |
ttttgaatagcaactcaaaaatcaaacctcttcttatttatataatatgaactaatttcttatatagtgaatgccctgaggaatgcaaggaagctatacc |
3323928 |
T |
|
| Q |
201 |
atcattgatgtatgctgcagccagaatttctgacctaccagaattgcgtgaccttagaactttgtttacagaaaaatatggaaattctcttgaaccatac |
300 |
Q |
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| T |
3323927 |
atcattgatgtatgctgcagcaagaatttctgacctaccagaattgcgtgaccttagaactttgtttacagaaaaatatggaaattctcttgaaccatac |
3323828 |
T |
|
| Q |
301 |
ataaataaagaggtaaaaccaatgatccacccttgtagagtatatttattattattgtttctaaggattgattaaataattgttgttccttagtttgttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323827 |
ataaataaagaggtaaaaccaatgatccacccttgtagagtatatttattattattgtttctaaggattgattaaataattgttgttccttagtttgttg |
3323728 |
T |
|
| Q |
401 |
agaagttga |
409 |
Q |
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| T |
3323727 |
agaagttga |
3323719 |
T |
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