View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8298_low_1 (Length: 296)
Name: NF8298_low_1
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 41932273 - 41932528
Alignment:
| Q |
16 |
catcactattggtgacaaaggatgtccaagagagaaccaaatagtggaaccaaactttctataagaacaaatattcaatagatgaaacgaagtaacaatt |
115 |
Q |
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| T |
41932273 |
catcactattggtgacaaaggatgtccaagagagaaccaaatagtggaaccaaactttctataagaacaaatattcaatagatgaaacgaagtaacaatt |
41932372 |
T |
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| Q |
116 |
tnnnnnnnnnnngccttgttttccttccatgtttaaaatggatcataaacagactagaacaatcacattaacaatactttaacaatatattnnnnnnnnt |
215 |
Q |
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| T |
41932373 |
t---aaaaaaaagccttgttttccttccatgtttaaaatggatcataaacaaactagaacaatcacatt---attacattaacaatatttaaaaaaaaat |
41932466 |
T |
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| Q |
216 |
gaaaatatacaacagcacaaaggtacaagtaaatatcaacatataactacaactgtaacctt |
277 |
Q |
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| T |
41932467 |
gaaaatatacaacagcacaaaggtacaagcaaatatcaacatataactacaactgaaacctt |
41932528 |
T |
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