View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8298_low_4 (Length: 339)
Name: NF8298_low_4
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 11637291 - 11636980
Alignment:
| Q |
18 |
atatctcagttctcccgttcttagaaatacgtgaagataaatcggctgaatacatattattcaactcttcatcaacaaatgaaacacgtagaaagttatc |
117 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||| || || |||||||||||||||||||| ||||| |
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| T |
11637291 |
atatctcagttctcccattctcagaaatacgtgaagataaatcggctgagtacatattatccaactcctcgtcgacaaatgaaacacgtagaaaattatc |
11637192 |
T |
|
| Q |
118 |
gatatgttgatggaaatgacggagaacccggtttgagacattaatctctggaccaaaaaagtatactttgcatggtgttatctgaaccctgcgaacatat |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11637191 |
aatatgttgatggaaatgacggagaacccgatttgagacattaatctctggaccacaaaagtatactttgcatggtgttatctgaaccctgcgaacatat |
11637092 |
T |
|
| Q |
218 |
accaacccattatccaaagatatagtcggtgaccgaggaggattatttgcattgaggtacattctgtagtgatctttcagccatcttgcaggttcataac |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
11637091 |
accaacccgttatccaaagatatagtcggtgaccgaggcggattatttgcacggaggtaccttctgtactgacctttcagccatctggcaggttcataac |
11636992 |
T |
|
| Q |
318 |
agaaatcctttg |
329 |
Q |
| |
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|||||||||||| |
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| T |
11636991 |
agaaatcctttg |
11636980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 41 - 329
Target Start/End: Complemental strand, 11628508 - 11628220
Alignment:
| Q |
41 |
gaaatacgtgaagataaatcggctgaatacatattattcaactcttcatcaacaaatgaaacacgtagaaagttatcgatatgttgatggaaatgacgga |
140 |
Q |
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|||||||||||||||||||| | |||||||| |||| |||||| ||||||||||| |||||||||||||||||||| ||||||| | | | | ||| | |
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| T |
11628508 |
gaaatacgtgaagataaatctgatgaatacagtttatccaactcctcatcaacaaacgaaacacgtagaaagttatccatatgttttttgtatttacgca |
11628409 |
T |
|
| Q |
141 |
gaacccggtttgagacattaatctctggaccaaaaaagtatactttgcatggtgttatctgaaccctgcgaacatataccaacccattatccaaagatat |
240 |
Q |
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|||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
11628408 |
gaacacgatttgagacattaatctctggaccacaaaagtatactttgcaaggtgttatctgtgccctgcgaacatataccaaaccgttatccaaagatat |
11628309 |
T |
|
| Q |
241 |
agtcggtgaccgaggaggattatttgcattgaggtacattctgtagtgatctttcagccatcttgcaggttcataacagaaatcctttg |
329 |
Q |
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||| ||||||||||| ||||||||| | | |||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
11628308 |
agttggtgaccgaggcagattatttgaactatggtacattttgtactgatctttcagccatctcacaggttcataacagaaatcatttg |
11628220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 11685255 - 11685566
Alignment:
| Q |
18 |
atatctcagttctcccgttcttagaaatacgtgaagataaatcggctgaatacatattattcaactcttcatcaacaaatgaaacacgtagaaagttatc |
117 |
Q |
| |
|
|||||| ||||| ||| ||| |||||| ||||||||||||| |||||||||| |||| |||| | ||||||||||| |||||||||||||||||||| |
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| T |
11685255 |
atatcttagttcgcccactctcagaaatgtgtgaagataaatctgctgaatacagtttatccaacccctcatcaacaaaagaaacacgtagaaagttatc |
11685354 |
T |
|
| Q |
118 |
gatatgttgatggaaatgacggagaacccggtttgagacattaatctctggaccaaaaaagtatactttgcatggtgttatctgaaccctgcgaacatat |
217 |
Q |
| |
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|||||||| ||| ||| |||||||||| || || || |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
11685355 |
gatatgtttatgaaaacgacggagaacacgattagatacattaatctctggaccacaaaagtatactttggaaggtgttatctgaaccctgcgaacatat |
11685454 |
T |
|
| Q |
218 |
accaacccattatccaaagatatagtcggtgaccgaggaggattatttgcattgaggtacattctgtagtgatctttcagccatcttgcaggttcataac |
317 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||| |||| | | ||||| |||| |||||| |||| || ||||||||||| ||||| |||||||||| |
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| T |
11685455 |
accaacccgtcatctaaagatatagtcggtgacggaggcaggtaatttgacttgatatacattttgtactggtctttcagccaccttgcgggttcataac |
11685554 |
T |
|
| Q |
318 |
agaaatcctttg |
329 |
Q |
| |
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|||||||||||| |
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|
| T |
11685555 |
agaaatcctttg |
11685566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 11689267 - 11689578
Alignment:
| Q |
18 |
atatctcagttctcccgttcttagaaatacgtgaagataaatcggctgaatacatattattcaactcttcatcaacaaatgaaacacgtagaaagttatc |
117 |
Q |
| |
|
|||||| ||||| ||| ||| |||||| ||||||||||||| |||||||||| |||| |||| | ||||||||||| |||||||||||||||||||| |
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| T |
11689267 |
atatcttagttcgcccactctcagaaatgtgtgaagataaatctgctgaatacagtttatccaacccctcatcaacaaaagaaacacgtagaaagttatc |
11689366 |
T |
|
| Q |
118 |
gatatgttgatggaaatgacggagaacccggtttgagacattaatctctggaccaaaaaagtatactttgcatggtgttatctgaaccctgcgaacatat |
217 |
Q |
| |
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|||||||| ||| ||| |||||||||| || || || |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
11689367 |
gatatgtttatgaaaacgacggagaacacgattagatacattaatctctggaccacaaaagtatactttggaaggtgttatctgaaccctgcgaacatat |
11689466 |
T |
|
| Q |
218 |
accaacccattatccaaagatatagtcggtgaccgaggaggattatttgcattgaggtacattctgtagtgatctttcagccatcttgcaggttcataac |
317 |
Q |
| |
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|||||||| | ||| |||||||||||||||||| |||| | | ||||| |||| |||||| |||| || ||||||||||| ||||| |||||||||| |
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| T |
11689467 |
accaacccgtcatctaaagatatagtcggtgacggaggcaggtaatttgacttgatatacattttgtactggtctttcagccaccttgcgggttcataac |
11689566 |
T |
|
| Q |
318 |
agaaatcctttg |
329 |
Q |
| |
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|||||||||||| |
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| T |
11689567 |
agaaatcctttg |
11689578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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