View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8298_low_6 (Length: 291)
Name: NF8298_low_6
Description: NF8298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8298_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 45317280 - 45317016
Alignment:
| Q |
13 |
atcatcacagcaccctgcaatcaatgtcgaagagggttcctttatttacaagactgaaaaaa-tgtatttgcatcagatgcaatattctagagtagtttc |
111 |
Q |
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| T |
45317280 |
atcatcacagcaccctgcaatcaatgtcgaagagagttcctttatttacaagacaaaaaaaaatgtatttgcatcagatgcaatattctagagtagcttc |
45317181 |
T |
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| Q |
112 |
tttagttgcttgagcaactgtacaatcttgttaaagaacagaaattttagttaagagatctcttaggttgaactgctatatgcctatatactccagaaaa |
211 |
Q |
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| T |
45317180 |
tttagttgctcaagcaactgtacaatcttgttaaagaacagaaattttagttaagaaatctcttaggttgaactgctatatgcctatatactccagaaaa |
45317081 |
T |
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| Q |
212 |
acattcaagtttcatccataacttaaagtaattattacaaaatatgtgttggttcaggtggagga |
276 |
Q |
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| T |
45317080 |
acattcaagtttcatccataacttaaagtaattattacaaaatatgtgttggttcaggtggagga |
45317016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 45326544 - 45326454
Alignment:
| Q |
54 |
ttatttacaagactgaaaaaatgtatttgcatcagatgcaatattctagagtagtttctttagttgcttgagcaactgtacaatcttgttaaaga |
148 |
Q |
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| T |
45326544 |
ttatttacaagac--aaaaactgtaattgcatcagacacaat--tctatagtagtttctttaaatccttgaacaactgtacaatcttgtaaaaga |
45326454 |
T |
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