View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_high_10 (Length: 353)
Name: NF8299_high_10
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 40 - 334
Target Start/End: Original strand, 6939053 - 6939340
Alignment:
| Q |
40 |
tgctgtaacatatctcagccgtccgatctttaatcggtggctgaattgaaatcaaattttgtgaaaatcagataaataaatctgaactgtaaaatcactt |
139 |
Q |
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| T |
6939053 |
tgctgtaacacatctcagccgtccgatctttaatcggtg-----actgaaatcaaactgtgtgaaaatcagataaataaatctgaactgtaaaatcactt |
6939147 |
T |
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| Q |
140 |
ttctaaggttcaaaccagctactgtgtgaagcatttacagtaggcgatccaggtcctattgtattcaatataaatcaaaagttaacatgtgtgtgcgagt |
239 |
Q |
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| T |
6939148 |
ttctatggtttaaatcagctactgtgtgaagcatttacaataggcgatctaggtcctattgtattcaatataaatcaaaagttaacatgtgtgt--gagt |
6939245 |
T |
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| Q |
240 |
gtttgtacaataataaaatacaaaattattaattacctaaatattggatttccttgaggccacatgaggttaatgaaatcttgatgagtcgtatc |
334 |
Q |
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| T |
6939246 |
gtttgtacaataataaaatacaaaattattaattacctaaaaattggatttccttgaggccacatgaggttaatgaaatcttgatgagtcgtatc |
6939340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 6931853 - 6931915
Alignment:
| Q |
250 |
taataaaatacaaaattattaattacctaaatattggatttccttgaggccacatgaggttaa |
312 |
Q |
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| T |
6931853 |
taataaaataaaaaacaattaattacctaaaagttggatttccttgaggccacaagaggttaa |
6931915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 43682078 - 43681907
Alignment:
| Q |
19 |
tttggtgttctaacagcgtcctgctgtaacatatctcagccgtccgatctttaatcggtggctgaattgaaatcaaattttgtgaaaatcagataaataa |
118 |
Q |
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| T |
43682078 |
tttggtgttgcaacagtgtcctgctgtaacagatctcagccgtccgatcctcaatcggtggctgag-----atcaaactgtgtgaaaaccggacaaataa |
43681984 |
T |
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| Q |
119 |
atctgaactgtaaaatcacttttctaaggttcaaaccagctactgtgtgaagcatttacagtaggcgatccaggtcc |
195 |
Q |
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| T |
43681983 |
atctgaactgttgaatcacttttctacggttcagatcagctactgcgtgaagcatttacagcaggcgatctaggtcc |
43681907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 5859155 - 5859107
Alignment:
| Q |
35 |
cgtcctgctgtaacatatctcagccgtccgatctttaatcggtggctga |
83 |
Q |
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| T |
5859155 |
cgtcctgatgtaacatatctccgccgtccgatctttaatcgatggctga |
5859107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 5859097 - 5859062
Alignment:
| Q |
109 |
agataaataaatctgaactgtaaaatcacttttcta |
144 |
Q |
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| T |
5859097 |
agataaataaatctgaactgttaaatcacttttcta |
5859062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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