View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_high_11 (Length: 345)
Name: NF8299_high_11
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 45082934 - 45082610
Alignment:
| Q |
1 |
gacccaggtaatgt--atatatgaaccaactctatggaacttatggcattcatattcatattgaataaaaggttcaataaaaaggactaaaataataact |
98 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45082934 |
gacccaggtaatgtgtatatatgaaccaactctatggaacttatggcattcatattcatattgaataaaaggttcaataacaaggactaaaataataact |
45082835 |
T |
|
| Q |
99 |
acttgttttaccactctttcttttatacagattcatctacaaatgttctgattgaagacaactacattgtctctggtgatgattgtattgcaattaaaag |
198 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45082834 |
acttgttttcccactctttctttcatacagattcatctacaaatgttctgattgaagacaactacattgtttctggtgatgattgtattgcaattaaaag |
45082735 |
T |
|
| Q |
199 |
tggatgggatgagtatggaatcaaagttggcaagccatcacaaaagataatcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcatta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45082734 |
tggatgggatgagtatggaatcaaagttggcaagccatcacaaaatataatcgtaagaaggctaacatgtatatcccctaaaagtgctttggttgcatta |
45082635 |
T |
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| Q |
299 |
ggcagtgaaatgtcaggtggaatcc |
323 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
45082634 |
ggcagtgaaatgtcaggtggaatcc |
45082610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 136 - 323
Target Start/End: Complemental strand, 45067711 - 45067524
Alignment:
| Q |
136 |
tacaaatgttctgattgaagacaactacattgtctctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaagttggcaagcca |
235 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
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| T |
45067711 |
tacaaacgttctaattgaagacaactacattgtctctggtgatgattgtattgcgattaaaagtggattggatgggtatggaatcaaagttggaaagcca |
45067612 |
T |
|
| Q |
236 |
tcacaaaagataatcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatcc |
323 |
Q |
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| T |
45067611 |
tcacaaaagataatcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatcc |
45067524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 45075258 - 45075084
Alignment:
| Q |
149 |
attgaagacaactacattgtctctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaagttggcaagccatcacaaaagataa |
248 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||| | |||| |
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| T |
45075258 |
attgaagacaactatatagtttctggtgatgattgtattgcaataaaaagtggatgggatgagtatggaatcaaatttggaaagccatctcaacaaataa |
45075159 |
T |
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| Q |
249 |
tcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatcc |
323 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45075158 |
tcataagaaggctaacatgtatatcccctaaaagtgcaatggttgcattaggcagtgaaatgtcaggtggaatcc |
45075084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 45078488 - 45078314
Alignment:
| Q |
149 |
attgaagacaactacattgtctctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaagttggcaagccatcacaaaagataa |
248 |
Q |
| |
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||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| | |||||||||| | |||| |
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| T |
45078488 |
attgaagacaacttcattgtctctggcgatgattgcattgcaataaaaagtggatgggatgagtatggaattaaagttggaatgccatcacaacaaataa |
45078389 |
T |
|
| Q |
249 |
tcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatcc |
323 |
Q |
| |
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|| |||||||| |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45078388 |
tcataagaaggttaacttgtatatcccctgatagtgctatggttgcattaggcagtgaaatgtcaggtggaatcc |
45078314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 322
Target Start/End: Complemental strand, 34505057 - 34504860
Alignment:
| Q |
125 |
acagattcatctacaaatgttctgattgaagacaactacattgtctctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaag |
224 |
Q |
| |
|
|||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||| ||| |
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| T |
34505057 |
acagattcatctacgaacgttaggatcgaagacaactacattgtctctggtgatgattgtattgcgataaaaagtggatgggatcaatatggaattaaat |
34504958 |
T |
|
| Q |
225 |
ttggcaagccatcacaaaagataatcgtaagaaggctaacatgtatatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatc |
322 |
Q |
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| || ||||||||| || | |||||| ||||||||||||||||||||||||| | ||||| ||| |||| ||||| ||||||||||| ||||||||| |
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| T |
34504957 |
tcggaaagccatcaaaacaaataatcataagaaggctaacatgtatatccccagatagtgctatgattgctttagggagtgaaatgtcgggtggaatc |
34504860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 29765256 - 29765336
Alignment:
| Q |
149 |
attgaagacaactacattgtctctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaagttggc |
229 |
Q |
| |
|
||||||||| |||||| || ||||| ||||| ||| |||| | || |||||||||||||||||||| |||||| ||||| |
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| T |
29765256 |
attgaagactgctacatagtttctggggatgactgtgttgctgtgaagagtggatgggatgagtatggcatcaaatttggc |
29765336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 323
Target Start/End: Complemental strand, 17584715 - 17584562
Alignment:
| Q |
170 |
tctggtgatgattgtattgcaattaaaagtggatgggatgagtatggaatcaaagttggcaagccatcacaaaagataatcgtaagaaggctaacatgta |
269 |
Q |
| |
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||||||||||||||| |||| || |||||||| ||| |||| ||||||||| || |||| | |||| ||| | ||||| | | |||||| | |||| |
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| T |
17584715 |
tctggtgatgattgtgttgctataaaaagtggttggaatgaatatggaatccaatttggaatgccaagccaacacataataattacaaggcttaaatgtg |
17584616 |
T |
|
| Q |
270 |
tatcccctaaaagtgcgatggttgcattaggcagtgaaatgtcaggtggaatcc |
323 |
Q |
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|||| ||| | ||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
17584615 |
tatcacctgatagtgctatgattgcattaggcagtgaaatgtctggtggaatcc |
17584562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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