View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_high_12 (Length: 327)
Name: NF8299_high_12
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 34949768 - 34949462
Alignment:
| Q |
1 |
gaatggaaacaacttttcttacaagctggcttcaaatactacaagatcttccccacgtttggttttaggtctcttattgagctctatccttaaaccttgc |
100 |
Q |
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| T |
34949768 |
gaatggaaacaacttttcttacaagctggcttcaaatactacaagatcttccccacgtttggttttaggtctcttattgagctctatccttaaaccttgc |
34949669 |
T |
|
| Q |
101 |
tgtaatttaataaataattgtannnnnnnnnnnn-ataaatttatattatagttgtaataaaggagccactcatatttaactctagtgatatatagatgg |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34949668 |
tgtaatttaataaataattgtatttttgctttgttataaatttatattatagttgtaataaaggagccactcatatttaactctagtgatatatagatgg |
34949569 |
T |
|
| Q |
200 |
cctctaaccagtgtaataagaagcaagaataagaatgtaatttgtgtgatatcaatttctcnnnnnnnnnncgcaaatagttttgtagtgccttgcacaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34949568 |
cctctaaccagtgtaataagaagcaagaataagaatgtaatttgtgtgatatcaatttctcaaaaaatat--gcaaatagttttgtagtgccttgcacaa |
34949471 |
T |
|
| Q |
300 |
cttacatca |
308 |
Q |
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||||||||| |
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| T |
34949470 |
cttacatca |
34949462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 34945368 - 34945113
Alignment:
| Q |
1 |
gaatggaaacaacttttcttacaagctggcttcaaatactacaagatcttccccacgtttggttttaggtctcttattgagctctatccttaaaccttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34945368 |
gaatggaaacaacttttcttacaagctggcttcaaatattacaagatcttcctcacatttggttttaggtctcttattgagctctatccttaaaccttgc |
34945269 |
T |
|
| Q |
101 |
tgtaatttaataaataattgtannnnnnnnnnnnataaatttatattatagttgtaataaaggagccactcatatttaactctagtgatatatagatggc |
200 |
Q |
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|||||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||| ||||| |||||| |||| |
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| T |
34945268 |
tgtaatttaataaataattgtatttttgcttcaaatatatttataaggggactgtaataaaggagccacttatatttaactcaagtgacatataggtggc |
34945169 |
T |
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| Q |
201 |
ctctaaccagtgtaataagaagcaagaataagaatgtaatttgtgtgatatcaatttctc |
260 |
Q |
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| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
34945168 |
ccctaaccagtgtaataa----caagaataagaatgtaatttgtgtgacatcaatttctc |
34945113 |
T |
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