View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8299_high_2 (Length: 640)
Name: NF8299_high_2
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_high_2 |
 |  |
|
| [»] scaffold0684 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 95 - 478
Target Start/End: Original strand, 19885313 - 19885687
Alignment:
| Q |
95 |
ttaatctgattggatttgttcatgtttattaatctgatttgatctttttgttgacattagaattagtagaaaatgatatgaaatgataatatgaattgtg |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
19885313 |
ttaatttgattggatttgttcatgtttattaatctgatttgatctttttcttgacattagaattagtagaaaatgatatgaagtaataatatgaattgtg |
19885412 |
T |
 |
| Q |
195 |
atgtttatgttttactgaatgagtgtaagaatgtgaattttgaactaatttcaagnnnnnnnnnnnnnnnnnngttggtttatttgtggatgatttatct |
294 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19885413 |
atgtttatgttttgctgaatgagaataagaatgtgaattttgaactaatttcaagttttttttt---------gttggtttatttgtggatgatttatct |
19885503 |
T |
 |
| Q |
295 |
accggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtgtttattaagtatctcatgttgctgcatt |
394 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||| | ||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
19885504 |
accgattcttcactgagcatttgcgttcactttccgtatctctcgcgatccaggtttgttaactttgtcgtgtttattaagtatcccatgttgctgcatt |
19885603 |
T |
 |
| Q |
395 |
ttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttcacgtgtatcgattgtggtattgaa |
478 |
Q |
| |
|
|| ||| | ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19885604 |
ttaatttgattggttaccataaaattgttgttgaatattttaatttgattgaatccgttcacgtgtatcgattgtggtattgaa |
19885687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 268 - 455
Target Start/End: Original strand, 19885148 - 19885334
Alignment:
| Q |
268 |
gttggtttatttgtggatgatttatctaccggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtg- |
366 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| |||||||||| || ||||| | |||||||| | ||||||||| ||| || || |
|
|
| T |
19885148 |
gttggttaatttgtggatgatttatctgccggttcttcgatgagcatttgagttgactttctgtatctctcg--aatcaggtttgtgcactctgttgtca |
19885245 |
T |
 |
| Q |
367 |
tttattaagtatctcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttca |
455 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
19885246 |
tttattaagtatcccatgttgctgaattttgattagtttggttaccataaaaatgttgttgaatgttttaatttgattggatttgttca |
19885334 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 95 - 478
Target Start/End: Complemental strand, 32811503 - 32811129
Alignment:
| Q |
95 |
ttaatctgattggatttgttcatgtttattaatctgatttgatctttttgttgacattagaattagtagaaaatgatatgaaatgataatatgaattgtg |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
32811503 |
ttaatttgattggatttgttcatgtttattaatctgatttgatctttttcttgacattagaattagtagaaaatgatatgaagtaataatatgaattgtg |
32811404 |
T |
 |
| Q |
195 |
atgtttatgttttactgaatgagtgtaagaatgtgaattttgaactaatttcaagnnnnnnnnnnnnnnnnnngttggtttatttgtggatgatttatct |
294 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32811403 |
atgtttaagttttgctgaatgagaataagaatgtgaattttgaactaatttcaagttttttttt---------gttggtttatttgtggatgatttatct |
32811313 |
T |
 |
| Q |
295 |
accggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtgtttattaagtatctcatgttgctgcatt |
394 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||| | ||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
32811312 |
accgattcttcactgagcatttgcgttcactttccgtatctctcgcgatccaggtttgttaactttgtcgtgtttattaagtatcccatgttgctgcatt |
32811213 |
T |
 |
| Q |
395 |
ttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttcacgtgtatcgattgtggtattgaa |
478 |
Q |
| |
|
|| ||| | ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
32811212 |
ttaatttgattggttaccataaaattgttgttgaatattttaatttgattgaatctgttcacgtgtatcgattgtggtactgaa |
32811129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 180 - 478
Target Start/End: Original strand, 24238151 - 24238439
Alignment:
| Q |
180 |
ataatatgaattgtgatgtttatgttttactgaatgagtgtaagaatgtgaattttgaactaatttcaagnnnnnnnnnnnnnnnnnngttggtttattt |
279 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24238151 |
ataatatgaattgtgatgtttaagttttgctgaatgagaataagaatgtgaattttgaactaatttcaagtttttttt----------gttggtttattt |
24238240 |
T |
 |
| Q |
280 |
gtggatgatttatctaccggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtgtttattaagtatc |
379 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24238241 |
gtggatgatttatctaccgattcttcactgagcatttgcgttcactttccgtatctctcgcgatccaggtttgttcactttgccgtgtttattaagtatc |
24238340 |
T |
 |
| Q |
380 |
tcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttcacgtgtatcgattgtggtattgaa |
478 |
Q |
| |
|
|||||||||||||||| ||| | ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
24238341 |
ccatgttgctgcattttaatttgattggttaccataaaattgttgttgaatattttaatttgattgaatccgttcacgtgtatcgattgtggtactgaa |
24238439 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 24230163 - 24230240
Alignment:
| Q |
101 |
tgattggatttgttcatgtttattaatctgatttgatctttttgttgacattagaattagtagaaaatgatatgaaat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24230163 |
tgattggatttgttcatgtttattaatctgatttgatatttttgttgacattagaattagtagaaaatgatatgaaat |
24230240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 268 - 455
Target Start/End: Original strand, 24229992 - 24230178
Alignment:
| Q |
268 |
gttggtttatttgtggatgatttatctaccggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcac---attgccg |
364 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| | |||| |||||||||| || ||||| | |||||||| | ||||||||| ||| |||| || |
|
|
| T |
24229992 |
gttggttaatttgtggatgatttatctgccgattcttcgatgagcatttgagttgactttctgtatctctcg--aatcaggtttgtgcactctattgtcg |
24230089 |
T |
 |
| Q |
365 |
tgtttattaagtatctcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttca |
455 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||| ||||| |
|
|
| T |
24230090 |
t--ttattaagtatcccatgttgctggattttgattagtttggttaccataaaaatgttgttgaatgtttttatttgattggatttgttca |
24230178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 32811560 - 32811482
Alignment:
| Q |
377 |
atctcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttca |
455 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
32811560 |
atctcatgttgctgaattttgattagtttggttaccataaaaatgttgttgaatgttttaatttgattggatttgttca |
32811482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 24229832 - 24229901
Alignment:
| Q |
15 |
atgaaatgagaataagaactgtgatgtttaagttttgttggttaatctaaaatgaaaatgagaataagat |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
24229832 |
atgaaataagaataagaactgtgatgtttaacttttgttggttaatttggaatgaaaatgagaataagat |
24229901 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 24229683 - 24229766
Alignment:
| Q |
18 |
aaatgagaataagaactgtgatgtttaagttttgttggttaatctaaaatgaaaatgagaataagatgatttgtaggttaatct |
101 |
Q |
| |
|
||||||||||||||| | |||||||| ||||| ||| |||||||| |||| |||||||||||||| | |||||||| ||||||| |
|
|
| T |
24229683 |
aaatgagaataagaattttgatgttttagtttggtttgttaatctgaaataaaaatgagaataagctaatttgtagcttaatct |
24229766 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 24229799 - 24229861
Alignment:
| Q |
139 |
tttttgttgacattagaattagtagaaaatgatatgaaatgataatatgaattgtgatgttta |
201 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||| | |||| ||| ||||||||||| |
|
|
| T |
24229799 |
tttttgttgacatgtgaattaatagaatatgatatgaaataagaataagaactgtgatgttta |
24229861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 95 - 472
Target Start/End: Complemental strand, 11495461 - 11495095
Alignment:
| Q |
95 |
ttaatctgattggatttgttcatgtttattaatctgatttgatctttttgttgacattagaattagtagaaaatgatatgaaatgataatatgaattgtg |
194 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11495461 |
ttaatttgattggatt-gttcatgtttattaatctgatttgatctttttgttgacattagaattagtagaaaatgatatgaaataataatatgaattgtg |
11495363 |
T |
 |
| Q |
195 |
atgtttatgttttactgaatgagtgtaagaatgtgaattttgaactaatttcaagnnnnnnnnnnnnnnnnnngttggtttatttgtggatgatttatct |
294 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11495362 |
atgtttaagttttgctgaatgagaataagaatgtgaattttgaactgatttcaagtttttttt----------gttggtttatttgtggatgatttatct |
11495273 |
T |
 |
| Q |
295 |
accggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtgtttattaagtatctcatgttgctgcatt |
394 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| | ||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11495272 |
accgattcttcactgagcatttgccttcactttccgtatctctcacgatccaagtttgttcactttgtcgtgtttattaagtatcccatgttgctgcatt |
11495173 |
T |
 |
| Q |
395 |
ttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttcacgtgtatcgattgtggt |
472 |
Q |
| |
|
|| ||| | ||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11495172 |
ttaatttgattggttaccatgaaattgttgttgaatattttaatttgattgaatccgttcacgtgtatcgattgtggt |
11495095 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 268 - 445
Target Start/End: Complemental strand, 11495626 - 11495450
Alignment:
| Q |
268 |
gttggtttatttgtggatgatttatctaccggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgt-g |
366 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| |||||||||| || ||||| |||||||||| | ||||||||| ||| || || | |
|
|
| T |
11495626 |
gttggttaatttgtggatgatttatctgccggttcttcgatgagcatttgagttgactttctgcatctctcg--aatcaggtttgtgcactctgttgtcg |
11495529 |
T |
 |
| Q |
367 |
tttattaagtatctcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattg |
445 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11495528 |
tttattaagtatcccatgttgctgaattttgattagtttggttaccataaaaatgttgttgaatgttttaatttgattg |
11495450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 11495870 - 11495801
Alignment:
| Q |
15 |
atgaaatgagaataagaactgtgatgtttaagttttgttggttaatctaaaatgaaaatgagaataagat |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
11495870 |
atgaaataagaataagaactgtgatgtttaacttttgttggttaatttggaatgaaaatgagaataagat |
11495801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11495769 - 11495701
Alignment:
| Q |
15 |
atgaaatgagaataagaactgtgatgtttaagttttgttggttaatctaaaatgaaaatgagaataaga |
83 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
11495769 |
atgaaataagaataagaactgtgatgtttaacttttgttggttaatttggaatgaaaatgagaataaga |
11495701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 10529146 - 10529206
Alignment:
| Q |
345 |
caggtttgttcacattgccgtgtttattaagtatctcatgttgctgcattttgattagttt |
405 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
10529146 |
caggtttgttcactctttcgtgtttattaagtttcccatgttgctgcattttgattagttt |
10529206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 11495998 - 11495931
Alignment:
| Q |
36 |
tgatgtttaagttttgttggttaatctaaaatgaaaatgagaataagatgatttgtaggttaatctga |
103 |
Q |
| |
|
|||||||| ||||| ||| |||||||| |||| |||||||||||||| | |||||||| ||||||||| |
|
|
| T |
11495998 |
tgatgttttagtttggtttgttaatctgaaataaaaatgagaataagctaatttgtagcttaatctga |
11495931 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 2e-85; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 269 - 473
Target Start/End: Complemental strand, 544530 - 544326
Alignment:
| Q |
269 |
ttggtttatttgtggatgatttatctaccggtacttcactgagcatttgccttcacttttggcatctctcgcgatccaggtttgttcacattgccgtgtt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
544530 |
ttggtttatttgtggatgatttatctaccgatacttcactgagcatttgcgttcactttccgtatctctcgcaatccaggtttgttcactttgtcgtgtt |
544431 |
T |
 |
| Q |
369 |
tattaagtatctcatgttgctgcattttgattagtttggtcaccataaaaatgttgttgaatattttaatttgattgaattcgttcacgtgtatcgattg |
468 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
544430 |
tattaagtatcccatgttgctgcattttgattagtttggttaccataaaaatgttgttgaatattttaatttgattgaatccgttcacgtgtatcgattg |
544331 |
T |
 |
| Q |
469 |
tggta |
473 |
Q |
| |
|
||||| |
|
|
| T |
544330 |
tggta |
544326 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 29490665 - 29490581
Alignment:
| Q |
15 |
atgaaatgagaataagaactgtgatgtttaagttttgttggttaatctaaaatgaaaatgagaataagatgatttgtaggttaat |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
29490665 |
atgaaatgagaataagaactcaattgtttaagttttgttggttaatctgaaatgaaaatgagaataagctgatttataggttaat |
29490581 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 29490815 - 29490729
Alignment:
| Q |
18 |
aaatgagaataagaactgtgatgttt-aagttttgttggttaatctaaaatgaaaatgagaataagatgatttgtaggttaatctga |
103 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| ||| ||||||||||||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
29490815 |
aaatgagaataagaattatgatgttttaagtttggtttgttaatctaaaataaaaatgagaataaactagtttgtaggttaatctga |
29490729 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 544719 - 544672
Alignment:
| Q |
139 |
tttttgttgacattagaattagtagaaaatgatatgaaatgataatat |
186 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
544719 |
tttttgttgaaatgagaattagtagaaaatgatatgaaaggataatat |
544672 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 29490566 - 29490527
Alignment:
| Q |
139 |
tttttgttgacattagaattagtagaaaatgatatgaaat |
178 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29490566 |
tttttgttgacataagaattagtagaaaattatatgaaat |
29490527 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 7390 - 7440
Alignment:
| Q |
156 |
attagtagaaaatgatatgaaatgataatatgaattgtgatgtttatgttt |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||||||| |||| |
|
|
| T |
7390 |
attagtagaaaatgatatgaaatgagaataagaattttgatgtttaagttt |
7440 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 7619 - 7682
Alignment:
| Q |
345 |
caggtttgttcacattgccgtgtttattaagtatctcatgttgctgcattttgattagtttggt |
408 |
Q |
| |
|
||||||||||||| || ||||||||||||| || ||| ||||| |||||||||||||||||| |
|
|
| T |
7619 |
caggtttgttcactctgttgtgtttattaagtttcccatattgctacattttgattagtttggt |
7682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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