View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_high_5 (Length: 421)
Name: NF8299_high_5
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 3534703 - 3534309
Alignment:
| Q |
18 |
aggagatcatccggaggggatgggtggagtaagagaccaacatctgaacttgctcctaacttggcaaaataatatgcgcattggttgccttcacgaagag |
117 |
Q |
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| T |
3534703 |
aggagatcatccggaggggatgggtggagtaagagaccaacatctgaacttgcttctaacttggcaaaataatatgtgcattggttaccttcacgaagag |
3534604 |
T |
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| Q |
118 |
tgtgatggaacgaatagttcgcctgggaaaacaaatctttaatttcttgaatgagaacagcatgaacgagaaacttcgacgtgttgctagttataaggtt |
217 |
Q |
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| T |
3534603 |
tgtgatggaacgaatagttcgcctgagaaaacaaatctttaatttcttgaatgagaacagcatgaatgagaaacttcgacgtgttgctagttataaggtt |
3534504 |
T |
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| Q |
218 |
aatagataggaaagaatccgaataacatgtcaaatcagcaatgtccatgttcttagctatggaaatgccgtgaaagatagtaatcaactcagcttgtaaa |
317 |
Q |
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| T |
3534503 |
aatagataggagaaaattcggataacatgtcaaatcagcaatgcccatgttgttagctatggaaatgccgtgaaagatagcagtcaactctacttgtaaa |
3534404 |
T |
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| Q |
318 |
atgtctgatgaagaaggaagacaacagtcccttcaccatgttgggcataggttaagagttatttattttcttgttttctttctgcacaggttctg |
412 |
Q |
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| T |
3534403 |
atgtctgatgaagaaggaagacagtagtcccttcatcatgttgggcataggctaagagttatttattttcttgttttctttctgtacaggttctg |
3534309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 53016615 - 53016514
Alignment:
| Q |
92 |
tgcgcattggttgccttcacgaagagtgtgatggaacgaatagttcgcctgggaaaacaaatctttaatttcttgaatgagaacagcatgaacgagaaac |
191 |
Q |
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|||||||||||||||||| | ||||||||||||| ||| | || ||||| |||| || |||||||||||| |||||||| |||||||||| | ||||| |
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| T |
53016615 |
tgcgcattggttgccttcgtggagagtgtgatggagagaaaaattggcctgagaaagcatatctttaatttcctgaatgagtacagcatgaatgtgaaac |
53016516 |
T |
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| Q |
192 |
tt |
193 |
Q |
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|| |
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| T |
53016515 |
tt |
53016514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 36098630 - 36098593
Alignment:
| Q |
343 |
agtcccttcaccatgttgggcataggttaagagttatt |
380 |
Q |
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| T |
36098630 |
agtccgttcaccatgttgggcataggctaagagttatt |
36098593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 34237243 - 34237291
Alignment:
| Q |
343 |
agtcccttcaccatgttgggcataggttaagagttatttattttcttgt |
391 |
Q |
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||||| |||||||||||||||||||| ||| | |||||| ||||||||| |
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| T |
34237243 |
agtcctttcaccatgttgggcataggctaaaaattatttcttttcttgt |
34237291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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