View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8299_low_1 (Length: 679)
Name: NF8299_low_1
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 147 - 658
Target Start/End: Original strand, 353996 - 354507
Alignment:
| Q |
147 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
353996 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat |
354095 |
T |
|
| Q |
247 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354096 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
354195 |
T |
|
| Q |
347 |
tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354196 |
tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
354295 |
T |
|
| Q |
447 |
gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354296 |
gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat |
354395 |
T |
|
| Q |
547 |
tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354396 |
tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg |
354495 |
T |
|
| Q |
647 |
ttacttacactg |
658 |
Q |
| |
|
|||||||||||| |
|
|
| T |
354496 |
ttacttacactg |
354507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 454 - 658
Target Start/End: Original strand, 10580686 - 10580889
Alignment:
| Q |
454 |
taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag |
553 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580686 |
taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag |
10580785 |
T |
|
| Q |
554 |
aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactta |
653 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
10580786 |
aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta |
10580884 |
T |
|
| Q |
654 |
cactg |
658 |
Q |
| |
|
||||| |
|
|
| T |
10580885 |
cactg |
10580889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 467 - 658
Target Start/End: Original strand, 10575299 - 10575489
Alignment:
| Q |
467 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
566 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| | | ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
10575299 |
aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg |
10575398 |
T |
|
| Q |
567 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|| || |||||||| || ||||||||||||| |||||| ||||||||||| |||||| |||||| || | ||||||||||||||||||| |
|
|
| T |
10575399 |
aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactg |
10575489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
| Q |
341 |
ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg |
391 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10580612 |
ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg |
10580662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 467 - 658
Target Start/End: Complemental strand, 21584867 - 21584677
Alignment:
| Q |
467 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
566 |
Q |
| |
|
||||||||||||||||||| |||| | || |||||| | | ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21584867 |
aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt |
21584768 |
T |
|
| Q |
567 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
||||| |||||||| ||| || |||||||||| ||||||||| | |||||||||||| |||||| |||| ||||||| ||||| ||||||| |
|
|
| T |
21584767 |
aagagaatcagtgg-tttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactg |
21584677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 468 - 658
Target Start/End: Original strand, 25084951 - 25085140
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
25084951 |
ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga |
25085050 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|||| |||||||| ||| || ||||| |||| ||||| || |||||||| |||||| |||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
25085051 |
agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactg |
25085140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 658
Target Start/End: Complemental strand, 24923729 - 24923540
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| | |
|
|
| T |
24923729 |
ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta |
24923630 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||| ||||| || |||||||| |||||| |||||| ||| |||||||||| || ||||||| |
|
|
| T |
24923629 |
agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactg |
24923540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 631
Target Start/End: Complemental strand, 31825766 - 31825664
Alignment:
| Q |
528 |
aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag |
627 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||| || |||||||| |||||| || |
|
|
| T |
31825766 |
aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag |
31825668 |
T |
|
| Q |
628 |
aatg |
631 |
Q |
| |
|
|||| |
|
|
| T |
31825667 |
aatg |
31825664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 468 - 658
Target Start/End: Complemental strand, 24920155 - 24919966
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||||| |
|
|
| T |
24920155 |
ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga |
24920056 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|||| ||||| || ||| |||||||| |||| ||||| || |||||||| ||||| |||||| ||| |||||||||| || ||||||| |
|
|
| T |
24920055 |
agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactg |
24919966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 658
Target Start/End: Original strand, 24981958 - 24982148
Alignment:
| Q |
467 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
566 |
Q |
| |
|
||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |
|
|
| T |
24981958 |
aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt |
24982057 |
T |
|
| Q |
567 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
||||| |||||||| ||| || ||||| |||| ||||| || |||||||| |||||| |||||| || ||||||| ||||| ||||||| |
|
|
| T |
24982058 |
aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg |
24982148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 658
Target Start/End: Complemental strand, 24497528 - 24497339
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| | |
|
|
| T |
24497528 |
ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta |
24497429 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|||| |||||||| || |||||||| |||| ||||| || |||||||| |||||| | |||| ||| ||||||| ||||| ||||||| |
|
|
| T |
24497428 |
agagaatcagtgg-attgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactg |
24497339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 467 - 650
Target Start/End: Complemental strand, 14261302 - 14261120
Alignment:
| Q |
467 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
566 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||| | | ||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
14261302 |
aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg |
14261203 |
T |
|
| Q |
567 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttac |
650 |
Q |
| |
|
||||| ||||| || || || ||||| |||| | || |||||||||||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
14261202 |
aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttac |
14261120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 658
Target Start/End: Original strand, 22898466 - 22898655
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||| ||| | | ||||| || |||||||||||||||||||||||| | | || | ||||| || |||| |
|
|
| T |
22898466 |
ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga |
22898565 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|| | |||||||| ||| || |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||| |
|
|
| T |
22898566 |
agcgtatcagtgg-tttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactg |
22898655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 658
Target Start/End: Original strand, 22950134 - 22950323
Alignment:
| Q |
468 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
567 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||| ||| | | ||||| || |||||||||||||||||||||||| | | || | ||||| || |||| |
|
|
| T |
22950134 |
ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga |
22950233 |
T |
|
| Q |
568 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactg |
658 |
Q |
| |
|
|| | |||||||| ||| || |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||| |
|
|
| T |
22950234 |
agcgtatcagtgg-tttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactg |
22950323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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