View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_10 (Length: 376)
Name: NF8299_low_10
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 11136137 - 11135926
Alignment:
| Q |
17 |
tgtgtgcttttgaagtgtcgccgaggaacagaacaaccaactcagtgtcctctttgttgtaccaccacgtcacaacaccgaagggaagtgctaatgcatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136137 |
tgtgtgcttttgaagtgtcgccgaggaacagaacaaccaactcagtgtcctctttgttgtaccaccacgtcacaacaccgaagggaagtgctaatgcatc |
11136038 |
T |
|
| Q |
117 |
accctccttaattgcaacaaccttctcttcagattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136037 |
accctccttaattgcaacaaccttctctttagattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaa |
11135938 |
T |
|
| Q |
217 |
ccatactgtact |
228 |
Q |
| |
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| |||||||||| |
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|
| T |
11135937 |
caatactgtact |
11135926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 23259133 - 23259358
Alignment:
| Q |
17 |
tgtgtgcttttgaagtgtcgccgaggaacagaacaaccaactcagtgtcctctttgttgtaccaccacgtcacaacaccgaagggaagtgctaatgcatc |
116 |
Q |
| |
|
|||||||||||||||| || || ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
23259133 |
tgtgtgcttttgaagtatcaccaaggaacaaaacaaccaactcagtgtcctctttgttataccaccatgtcacaacaccgaagggaagtgctaacgcatc |
23259232 |
T |
|
| Q |
117 |
accctccttaattgcaacaaccttctcttcagattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23259233 |
accctccttaattgcaacaaccttctcttctgattcaggtagcacaattccagcaactccacttcctgtttcatcaaattttcaccattaagtatctcaa |
23259332 |
T |
|
| Q |
217 |
cca---tactgtactatcaatattgg |
239 |
Q |
| |
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| | |||| ||||||||||||||| |
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| T |
23259333 |
caattctactatactatcaatattgg |
23259358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 23277011 - 23277234
Alignment:
| Q |
17 |
tgtgtgcttttgaagtgtcgccgaggaacagaacaaccaactcagtgtcctctttgttgtaccaccacgtcacaacaccgaagggaagtgctaatgcatc |
116 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
23277011 |
tgtgtgctttagaagtatcgccgaggaacagaacaaccaactcagtgtcatctttgttataccaccatgtcacaacaccaaagggaagtgctaaagcatc |
23277110 |
T |
|
| Q |
117 |
accctccttaattgcaacaaccttctcttcagattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||| |
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|
| T |
23277111 |
accctccttaattgcaacaaccttctcttctgattcaggtagcacaattccagcaactccacttcctgttacaacaaatcatcactattaagtatctcaa |
23277210 |
T |
|
| Q |
217 |
cca---tactgtactatcaatatt |
237 |
Q |
| |
|
| | |||| ||||||||||||| |
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|
| T |
23277211 |
caattctactatactatcaatatt |
23277234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 27543536 - 27543761
Alignment:
| Q |
17 |
tgtgtgcttttgaagtgtcgccgaggaacagaacaaccaactcagtgtcctctttgttgtaccaccacgtcacaacaccgaagggaagtgctaatgcatc |
116 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| |
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|
| T |
27543536 |
tgtgtgcttttgaagtatcgccaaggaacagaacaactaactcagtgtcctctttgttgtaccaccatgtcacaacaccaaaagggagtgctaatgcatc |
27543635 |
T |
|
| Q |
117 |
accctccttaattgcaacaaccttctcttcagattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |
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|
| T |
27543636 |
accctccttaattgcgacaaccttctcttttgattcaggtagcacaattccagcaactccacttcctgtatcaacaaatctttgccattaagaatctcaa |
27543735 |
T |
|
| Q |
217 |
cca---tactgtactatcaatattgg |
239 |
Q |
| |
|
| | |||| ||||||||||||||| |
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|
| T |
27543736 |
caattctactatactatcaatattgg |
27543761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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