View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_13 (Length: 346)
Name: NF8299_low_13
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_13 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 11177266 - 11177600
Alignment:
| Q |
3 |
caagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
102 |
Q |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
11177365 |
T |
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| Q |
103 |
aattgttatatgctcagccccgcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttgaaaataaagggaatttggat |
202 |
Q |
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| T |
11177366 |
aattgttatatactcagcccagcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggat |
11177465 |
T |
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| Q |
203 |
tggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaattggaattgaataggaaagtaataagaaa |
302 |
Q |
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| T |
11177466 |
tggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaattggaattgagtaagaaagtaataagaaa |
11177565 |
T |
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| Q |
303 |
ttggattgctgaacgaaaatagaacacaggttctg |
337 |
Q |
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| T |
11177566 |
ttggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 16720 - 16366
Alignment:
| Q |
1 |
tccaagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaata |
100 |
Q |
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| T |
16720 |
tccaagaaacataactgcaattggaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcaacaata |
16621 |
T |
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| Q |
101 |
acaattgttatatgctcagccccgcaacaa------------------caattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttg |
182 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16620 |
acaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcaactttg |
16521 |
T |
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| Q |
183 |
aaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaattggaattg |
282 |
Q |
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| T |
16520 |
aaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaattggaattg |
16421 |
T |
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| Q |
283 |
aataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
337 |
Q |
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| T |
16420 |
aataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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