View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_16 (Length: 305)
Name: NF8299_low_16
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_16 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 33953231 - 33952960
Alignment:
| Q |
18 |
aacttttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33953231 |
aactcttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
33953132 |
T |
|
| Q |
118 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcagaaaaggaatgaataacagattgcnnnnnnntttaaatagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
33953131 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcggaaaaggaatgaataacagattgcaaaaaaatttcaatagcat |
33953032 |
T |
|
| Q |
218 |
tttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33953031 |
tttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
33952960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 33960537 - 33960266
Alignment:
| Q |
18 |
aacttttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |
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| T |
33960537 |
aactcttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatttga |
33960438 |
T |
|
| Q |
118 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcagaaaaggaatgaataacagattgcnnnnnnntttaaatagcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
33960437 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaaatcaagcgatcaattgcggaaaaggaatgaataacagattgcaaaaaaatttcaatagcat |
33960338 |
T |
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| Q |
218 |
tttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33960337 |
tttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
33960266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 33975832 - 33975566
Alignment:
| Q |
18 |
aacttttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
117 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||| |
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| T |
33975832 |
aactcttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatatga |
33975733 |
T |
|
| Q |
118 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcagaaaaggaatgaataacagattgc-nnnnnnntttaaatagca |
216 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
33975732 |
gaccaatccaacgcacatgtttcatctgcaaatgtgaaactcacgcaatcaattgcagaaaaggaattaataacagattgcaacagatttttcaatagca |
33975633 |
T |
|
| Q |
217 |
ttttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
289 |
Q |
| |
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|||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
33975632 |
-tttttagatggtcaaatttagaggaagg-----taagtattactaaccagttgataccgacaatatacgggc |
33975566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 33992751 - 33992485
Alignment:
| Q |
18 |
aacttttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
117 |
Q |
| |
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|||||||||||||||||||||| ||| |||| || |||||||| ||||||||||| | ||||||||||| |||||| ||||||| ||||| ||||||| |
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| T |
33992751 |
aacttttagtttactcatttttttgatcgactcaggaaatgagtattgcttggtatgcaaatttaaaatcaaaacctcgacctgagttggttgcatttga |
33992652 |
T |
|
| Q |
118 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcagaaaaggaatgaataacagattgcnnnnnnntt-taaatagca |
216 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||||| | | |||||||| |||||||||||||||||||||| | || | ||||| | |
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| T |
33992651 |
gaccaatctgacgcacatgcttcatctgcaaatttgaaactaacacaatcaattgtggaaaaggaatgaataacagattacagcaaaattatcaatagta |
33992552 |
T |
|
| Q |
217 |
ttttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatat |
283 |
Q |
| |
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|||||| | |||| || |||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
33992551 |
tttttttgttggtgtaatatagaaaaaggtagtataagtattactaaccagttgataccgacaatat |
33992485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 33942733 - 33942637
Alignment:
| Q |
55 |
aatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatg |
151 |
Q |
| |
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|||| |||||| ||||| |||||||||||||||||||||||| | ||||||| | || ||| |||||||| | || || |||||||||||||||| |
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| T |
33942733 |
aatgtgtactgtttggtttgaagatttaaaatcagaacctcagcaagagctggctgcacttgggaccaatctgaagcgcaagtttcatctgcaaatg |
33942637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 33914011 - 33913946
Alignment:
| Q |
60 |
gtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatc |
125 |
Q |
| |
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|||||| | ||| |||||| ||||||||||||||||||| |||||||| | || ||| |||||||| |
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| T |
33914011 |
gtactgttcggtttgaagaattaaaatcagaacctcaacatgagctggctgcacttgggaccaatc |
33913946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 8277521 - 8277796
Alignment:
| Q |
18 |
aacttttagtttactcatttttgcaatccactcgggtaatgagtactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||| |
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| T |
8277521 |
aacttttagtttactcatttttgcaatccactcggttaatgagtactgcttggtatgaagatttaaaattagaacctcggcctgagctgtttgtatttga |
8277620 |
T |
|
| Q |
118 |
gaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcgatcaattgcagaaaaggaatgaat---aacagattgc-nnnnnnntttaaata |
213 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||| | | |||||||| |||||| ||||||| |||||||||| ||| ||| |
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| T |
8277621 |
gaccaatccaacgcatatgtttcatctgcaaatgtgaaactcacgtggtcaattgcggaaaagaaatgaatagcaacagattgcaagaaatttttcgata |
8277720 |
T |
|
| Q |
214 |
gcattttttagatggtcaaagttagaaaaagggagtataagtattactaaccagctgataccgacaatatacgggc |
289 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8277721 |
gcattttttagttggtcaaatttagagaaagttagtataagtattactaaccagttgataccgacaatatacgggc |
8277796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 12752 - 12656
Alignment:
| Q |
61 |
tactgcttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaac |
157 |
Q |
| |
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|||||||||||||||||||||||||| | |||||| |||||||||||| |||||| |||||||| |||||| |||||||||||||| ||||||| |
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| T |
12752 |
tactgcttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaac |
12656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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