View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_18 (Length: 239)
Name: NF8299_low_18
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19223422 - 19223204
Alignment:
| Q |
1 |
tgtaactgtgataatgcatgagaatacaattcgacccccctatctcatggtatatgcatttacaaccaatatgcttatatttaagtataatcctatgtac |
100 |
Q |
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| T |
19223422 |
tgtaactgtgataatgcatgagaatacaat-cgacctccctatcacatggtatatgcatttacaaccaacatgcttatatttaagtataatcctatgtac |
19223324 |
T |
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| Q |
101 |
taacattttaataatcaccatgccgtcatatatttattccaaatcatatgaaagcaaacttttatcatcatttcaattcaattggcaagtcaaatattta |
200 |
Q |
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| T |
19223323 |
taacattttaataatcaccatgccgtcatatatttattccaaatcatatgaaagcaaatttttatcatcatttcaattcaattggcaagtcaaatattta |
19223224 |
T |
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| Q |
201 |
tccaaattacatgaaagtag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
19223223 |
tccaaattacatgaaagtag |
19223204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 22536929 - 22536884
Alignment:
| Q |
104 |
cattttaataatcaccatgccgtcatatatttattccaaatcatat |
149 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
22536929 |
cattttaacaatcaacatgcattcatatatttattccaaatcatat |
22536884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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