View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_2 (Length: 651)
Name: NF8299_low_2
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 45378272 - 45378892
Alignment:
| Q |
1 |
cagcaagggaatgaagctgggtgatcaaagtccacaatttagtcatatgtgtgtgtgactatatctcccaaataatctgatttgattgattatagcaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378272 |
cagcaagggaatgaagctgggtgatcaaagtccacaacttagtcatatgtgtgtgtgactatatctcccaaataatctgatttgattgattatagcaaga |
45378371 |
T |
|
| Q |
101 |
agcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttgaggttcaaactacctaggtatttggcgtatgcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
45378372 |
agcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttcaggttcaaactacataggtatttggcgtatgcaag |
45378471 |
T |
|
| Q |
201 |
tggaattctttctaaacaataggaatggtccctctctcatatacaattaataataaataatgtttgtgatgaaatgaatcgagggacacgtggaaagaga |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45378472 |
tgcaattctttctaaacaataggaatggtccctctctcatatacaattaat---aaataatgtttctgatgaaatgaatcgagggacacgtggaaagaga |
45378568 |
T |
|
| Q |
301 |
agagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagataataaataatatgtcatcttatttagtttgtttcatgattag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378569 |
agagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagatgataaataatatgtcatcttatttagtttgtttcatgattag |
45378668 |
T |
|
| Q |
401 |
gtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcgatta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45378669 |
gtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcgatta |
45378768 |
T |
|
| Q |
501 |
atctgcttcatcaatccctatctgatgatcatgaaagtacataggtacatacatcagtttggaatttagcttgaaaaactcagtattagtttttaacaaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45378769 |
atctgcttcatcaatccctatctgatgatcatgaaagtacataggtacatacatcagtttggaatttagcttgaaaaactcagtattagtttttaacaaa |
45378868 |
T |
|
| Q |
601 |
tttatcgttttgtaaaatatatgc |
624 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
45378869 |
tttatcattttgtaaaatatatgc |
45378892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 415 - 578
Target Start/End: Original strand, 33087295 - 33087462
Alignment:
| Q |
415 |
aaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
514 |
Q |
| |
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||||||||||| ||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33087295 |
aaggttatttgcttccttgcccaaagcacaagc-acgtgtgcacaaaatggaacagcacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
33087393 |
T |
|
| Q |
515 |
tccctatct--gatgatcatgaaagtacataggtacata---catcagtttggaatttagcttgaaaaa |
578 |
Q |
| |
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||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| |
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| T |
33087394 |
tccctattttatatgatcatgaaagtacataggtatatacatcatcagtttggaatttaacttaaaaaa |
33087462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 22819027 - 22818993
Alignment:
| Q |
542 |
taggtacatacatcagtttggaatttagcttgaaa |
576 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
22819027 |
taggtacatacatcagtttggaatttagcatgaaa |
22818993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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