View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_22 (Length: 221)
Name: NF8299_low_22
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 10184516 - 10184320
Alignment:
| Q |
18 |
atttcttcactgatattcaccctttttcttcatttacttctagaattccttttatattttcttgaacttctcacattcatgcttggtgataaagtgatat |
117 |
Q |
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| T |
10184516 |
atttcttcactgatattcaccctttttcttcatttacttctagaattccttttatattttcttgaacttctcacattcatgcttggtgataaagtgatat |
10184417 |
T |
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| Q |
118 |
gttgacaaatgttgtgttgatgctctaacatttacctagtcatatttttgctcgcttaagtggtaataaggcaacacgtttaataactttcttctca |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
10184416 |
gttggcaaatgttgtgttgatgctctaacatttacctagtcatatttttgctcgcttaagtggtaatagggcaacatttttaataactttcttctca |
10184320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 32165919 - 32165810
Alignment:
| Q |
30 |
atattcaccctttttcttcatttacttctagaattccttttatattttcttgaacttctcacattcatgcttggtgataaagtgatatgttgacaaatgt |
129 |
Q |
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|||||| || |||| | |||||| |||| |||||||||||||| ||||||||||||| | |||||||||| |||||| | |||||||||| ||||| | |
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| T |
32165919 |
atattccccattttgcgtcattttcttccagaattccttttattcgttcttgaacttcttaaattcatgctttgtgatacaatgatatgttggcaaatct |
32165820 |
T |
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| Q |
130 |
tgtgttgatg |
139 |
Q |
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|||||||||| |
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| T |
32165819 |
tgtgttgatg |
32165810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 35629138 - 35629204
Alignment:
| Q |
87 |
ctcacattcatgcttggtgataaagtgatatgttgacaaatgttgtgttgatgctctaacatttacc |
153 |
Q |
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| T |
35629138 |
ctcaaattcttgcatggtgataaagtgatatgtagacaaatgttatgttgatgctttaacatctacc |
35629204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 15487221 - 15487287
Alignment:
| Q |
17 |
catttcttcactgatattcaccctttttcttcatttacttctagaattccttttatattttcttgaa |
83 |
Q |
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| T |
15487221 |
catttctttagtgatattgcccccttttcttcatttacttcaagaattcattttatcttttcttgaa |
15487287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 21673306 - 21673441
Alignment:
| Q |
17 |
catttcttcactgatattcaccctttttcttcatttacttctagaattccttttatattttcttgaacttctcacattcatgcttggtgataaagtgata |
116 |
Q |
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||||||| || ||||||| | ||| |||||||||||| || | || |||||||| || |||| ||||||| || |||||| ||||||||||||||| |
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| T |
21673306 |
catttctccaatgatatttcctcttcttcttcatttacgtccataaaaccttttattcattattgatcttctcaaatgcatgctaggtgataaagtgata |
21673405 |
T |
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| Q |
117 |
tgttgacaaatgttgtgttgatgctctaacatttacc |
153 |
Q |
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| ||| ||||| |||||||||||| | ||||| |||| |
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| T |
21673406 |
tattggcaaat-ttgtgttgatgccccaacatctacc |
21673441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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