View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8299_low_23 (Length: 220)
Name: NF8299_low_23
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 27918134 - 27918321
Alignment:
| Q |
16 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccgatcttgattaataattcaaatactacattgttccccaatattcaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918134 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccaatcttgattaataattcaaatactacattgttccccaatattcaag |
27918233 |
T |
|
| Q |
116 |
atgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatc |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918234 |
atgcttagttcatttgttgagaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctactggagtgaagatc |
27918321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 27923414 - 27923509
Alignment:
| Q |
108 |
tattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatc |
203 |
Q |
| |
|
|||||||||||||||| || ||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27923414 |
tattcaagatgcttagttcttttgttggtaaagtacaaaagagtttatcactctttgtaccgagaaagcatgcattgagctactggagtgaagatc |
27923509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 27929786 - 27929884
Alignment:
| Q |
105 |
caatattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatc |
203 |
Q |
| |
|
||||||||||||||||||| || ||||||| || | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
27929786 |
caatattcaagatgcttagttcttttgttggtaaagcacaaaagagtttatcagtctttgtacccagaaagcatgcattgagctactggaatgaagatc |
27929884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 27896116 - 27896201
Alignment:
| Q |
105 |
caatattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctac |
190 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27896116 |
caatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctac |
27896201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27896005 - 27896090
Alignment:
| Q |
16 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccgatcttgattaataattcaaatactacattgttc |
102 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||| ||||||| |||| || |||| |||||||||| | ||||||| |||||| |
|
|
| T |
27896005 |
tcgtgtcctcgttcagcataaatagccaaac-ctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttc |
27896090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University