View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_24 (Length: 219)
Name: NF8299_low_24
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 10651373 - 10651191
Alignment:
| Q |
18 |
agaaaagtgaaggtaaatactgaagtaagataaaacataaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
117 |
Q |
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| T |
10651373 |
agaaaagtgaaggtaaatactgaagtaagataaaacacaaaatgaaagtaaatttattaaaagatgaaaataatatagtttattcctaagtttgaagtat |
10651274 |
T |
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| Q |
118 |
gcaattgtttttcttaaatataagttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaac |
200 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10651273 |
gcaactgtttttcttaaatataacttagaatgtttagaagatagtaatgcaattatagagcaagataagagaaaaatataaac |
10651191 |
T |
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