View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8299_low_5 (Length: 490)
Name: NF8299_low_5
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 28449591 - 28450053
Alignment:
| Q |
11 |
gtagcagagaataccatgtagtataacaaaaacagatgagtgaatctatgaaattttgcagattaaagatggatgtttgtccatacatacaactcaaaaa |
110 |
Q |
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| T |
28449591 |
gtagcagagaatatcatgtagtataacaaaaacagataagtgaatctatgaaattttgcagattaaagatggatgtttgtccatacatacaactcaaaaa |
28449690 |
T |
|
| Q |
111 |
agaatcaaactgacaaatacaaatacaactaaacatgggaaaaactttagactcaattgttacagttggaagcattacaaatctcaacattgcagcttga |
210 |
Q |
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| T |
28449691 |
agaatcaaactgacaaatacaaatacaactaaacatgggaaaaactttagaatcaattgttacagttggaagcattacaaatctcaacattgcagcttga |
28449790 |
T |
|
| Q |
211 |
atgctaataattgcatcgcataaaggcggccgctaataattacacaagttcaatgtatgccatgggtgcattatcaccccgccttggtagggttcttata |
310 |
Q |
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| T |
28449791 |
atgctaataattgcatcgcataaaggcggccactaataattacacaagttcaatgtatgccatgggtgcattatcaccccgccttggtagggttcttata |
28449890 |
T |
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| Q |
311 |
attcttgtataaccaccatttctttcgccgtaacgttcttgaacctccgcaaataaagcatgaacaatctgcttctcatagatgaagccaagggcttgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28449891 |
attcttgtataaccaccatttctttcgccgtaacgttcttgaacctccgcaaataaagcatgaacaatctgcttctcatagatgaagccaagggcttgtc |
28449990 |
T |
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| Q |
411 |
ttcttttatgaagtgaaccatcttttgcaagagtgatcattttatcaacatacttcctaattg |
473 |
Q |
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| T |
28449991 |
ttcttttatgaagtgaaccatcttttgcaagagtgatcattttatcaacatacttcctaattg |
28450053 |
T |
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