View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8299_low_8 (Length: 399)

Name: NF8299_low_8
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8299_low_8
NF8299_low_8
[»] chr1 (2 HSPs)
chr1 (231-380)||(16099323-16099472)
chr1 (47-98)||(16099120-16099171)
[»] chr4 (3 HSPs)
chr4 (231-375)||(54353154-54353298)
chr4 (47-98)||(54354337-54354388)
chr4 (325-366)||(11514138-11514179)
[»] chr2 (5 HSPs)
chr2 (231-330)||(35110427-35110526)
chr2 (264-368)||(31712639-31712742)
chr2 (264-368)||(39156369-39156472)
chr2 (264-368)||(45330320-45330425)
chr2 (346-380)||(10414512-10414546)
[»] chr6 (5 HSPs)
chr6 (264-368)||(27682787-27682890)
chr6 (264-368)||(27690108-27690211)
chr6 (264-368)||(30230074-30230177)
chr6 (264-368)||(17354169-17354274)
chr6 (325-368)||(13143727-13143770)
[»] chr5 (1 HSPs)
chr5 (325-379)||(5520911-5520965)
[»] chr3 (1 HSPs)
chr3 (47-88)||(28102986-28103025)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 231 - 380
Target Start/End: Original strand, 16099323 - 16099472
Alignment:
Q  231 aattttctttcaactcatgaaatttatttcacaaatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16099323 aattttctttcaactcatgaaatttatttcacaaatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgg 16099422  T
Q  331 gtttgattttggagattggggttagggttctaagaagagaatagtaccca 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16099423 gtttgattttggagattggggttagggttctaagaagagaatagtaccca 16099472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 16099120 - 16099171
Alignment:
Q  47 tgaaacgcaccgtttcacttaaacacatatattatattataacaataaaaaa 98  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  16099120 tgaaacgcaccgtttcactcaaacacgtatattatattataataataaaaaa 16099171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 231 - 375
Target Start/End: Complemental strand, 54353298 - 54353154
Alignment:
Q  231 aattttctttcaactcatgaaatttatttcacaaatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54353298 aattttctttcaactcatgaaatttatttcacaaatcaagcactcataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgg 54353199  T
Q  331 gtttgattttggagattggggttagggttctaagaagagaatagt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54353198 gtttgattttggagattggggttagggttctaagaagagaatagt 54353154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 54354388 - 54354337
Alignment:
Q  47 tgaaacgcaccgtttcacttaaacacatatattatattataacaataaaaaa 98  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  54354388 tgaaacgcaccgtttcacttaaacacatatattataatataataataaaaaa 54354337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 11514179 - 11514138
Alignment:
Q  325 atttgggtttgattttggagattggggttagggttctaagaa 366  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  11514179 atttgggtttgattttggagattgaggttagggttctaagaa 11514138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 35110427 - 35110526
Alignment:
Q  231 aattttctttcaactcatgaaatttatttcacaaatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgg 330  Q
    ||||||||||||| ||||||||| ||||  |||||||||||||||||||   |||||||||| | |||||||||||| ||| ||||||||||||||||||    
T  35110427 aattttctttcaaatcatgaaatctattcaacaaatcaagcacccataaagaaaattatacatctaagctaagctatttcaaagtacaagtgagatttgg 35110526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 31712639 - 31712742
Alignment:
Q  264 aatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttctaa 363  Q
    |||||| ||||||||||||||||||| || |||||  || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  31712639 aatcaaacacccataagagaaattattcaccaaagtaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggttctga 31712737  T
Q  364 gaaga 368  Q
    |||||    
T  31712738 gaaga 31712742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 39156472 - 39156369
Alignment:
Q  264 aatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttctaa 363  Q
    |||||| ||||||||||||||||||| || |||||  || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  39156472 aatcaaacacccataagagaaattattcaccaaagtaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggttctga 39156374  T
Q  364 gaaga 368  Q
    |||||    
T  39156373 gaaga 39156369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 45330320 - 45330425
Alignment:
Q  264 aatcaagcacccataagagaaa--ttatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttct 361  Q
    |||||| |||||||||||||||  |||| || |||||| || | || ||||| ||||||| | ||||||| ||||||||||||||||||||||||||| |    
T  45330320 aatcaaacacccataagagaaaaattattcaccaaagcaaaacaatttcatattacaagtta-atttgggattgattttggagattggggttagggtttt 45330418  T
Q  362 aagaaga 368  Q
     ||||||    
T  45330419 gagaaga 45330425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 10414512 - 10414546
Alignment:
Q  346 ttggggttagggttctaagaagagaatagtaccca 380  Q
    ||||||||||||| |||||||||||||||||||||    
T  10414512 ttggggttagggtcctaagaagagaatagtaccca 10414546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 27682787 - 27682890
Alignment:
Q  264 aatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttctaa 363  Q
    |||||| ||||||||||||||||||| || |||||  || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  27682787 aatcaaacacccataagagaaattattcaccaaagtaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggttctga 27682885  T
Q  364 gaaga 368  Q
    |||||    
T  27682886 gaaga 27682890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 27690108 - 27690211
Alignment:
Q  264 aatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttctaa 363  Q
    |||||| ||||||||||||||||||| || |||||  || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  27690108 aatcaaacacccataagagaaattattcaccaaagtaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggttctga 27690206  T
Q  364 gaaga 368  Q
    |||||    
T  27690207 gaaga 27690211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 30230177 - 30230074
Alignment:
Q  264 aatcaagcacccataagagaaattatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttctaa 363  Q
    |||||| ||||||||||||||||||| || |||||  || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  30230177 aatcaaacacccataagagaaattattcaccaaagtaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggttctga 30230079  T
Q  364 gaaga 368  Q
    |||||    
T  30230078 gaaga 30230074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 17354169 - 17354274
Alignment:
Q  264 aatcaagcacccataagagaaa--ttatacaacaaagctaagctatatcatagtacaagtgagatttgggtttgattttggagattggggttagggttct 361  Q
    |||||| |||||||||||||||  |||| || |||||| || | || ||||| ||||||| | ||||||||||||||||||||||||||||||||||| |    
T  17354169 aatcaaacacccataagagaaaaattattcaccaaagcaaaacaatttcatattacaagtta-atttgggtttgattttggagattggggttagggtttt 17354267  T
Q  362 aagaaga 368  Q
     ||||||    
T  17354268 gagaaga 17354274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 13143770 - 13143727
Alignment:
Q  325 atttgggtttgattttggagattggggttagggttctaagaaga 368  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  13143770 atttaggtttgattttggagattggggttagggttctgagaaga 13143727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 5520965 - 5520911
Alignment:
Q  325 atttgggtttgattttggagattggggttagggttctaagaagagaatagtaccc 379  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  5520965 atttgggtttgattttggagattggggctagggttctaagaaaagaatagtaccc 5520911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 28102986 - 28103025
Alignment:
Q  47 tgaaacgcaccgtttcacttaaacacatatattatattataa 88  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  28102986 tgaaacgcaccgtttcacttaaacac--atattatattataa 28103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University