View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8299_low_9 (Length: 397)
Name: NF8299_low_9
Description: NF8299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8299_low_9 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 24 - 392
Target Start/End: Original strand, 3390055 - 3390423
Alignment:
| Q |
24 |
agggaaagcttttcaaaaacaaataatcttggaaaagtggtcactaaatataaaatttgagatgtgatcaaataataacctggaaagggtggtgcatgtt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390055 |
agggaaagcttttcaaaaacaaataatcttgggaaagtggtcactaaatataaaatttgagatgtgatcaaataataacctggaaagggtggtgcatgtt |
3390154 |
T |
|
| Q |
124 |
caatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390155 |
caatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccag |
3390254 |
T |
|
| Q |
224 |
tgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttgt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3390255 |
tgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttgt |
3390354 |
T |
|
| Q |
324 |
tgatctttctcaaagtattcatagataggtattccatgaactttctcgaatacgtttatctctgcttct |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3390355 |
tgatctttctcaaagtattcatagataggtattccatgaactttctcgaatacgtttatctctggttct |
3390423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 44 - 387
Target Start/End: Original strand, 3403358 - 3403701
Alignment:
| Q |
44 |
aaataatcttggaaaagtggtcactaaatataaaatttgagatgtgatcaaataataacctggaaagggtggtgcatgttcaatcacttgtgggagatca |
143 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||| ||| ||||| |||||| | | ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3403358 |
aaattatcttgggaaagtggcaactaaatataaactttcagatgcgatcaagcatttacctggagagggtggtgcatgttcaatcacttgtgggagatca |
3403457 |
T |
|
| Q |
144 |
aaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttcatatc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3403458 |
aaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttcatatc |
3403557 |
T |
|
| Q |
244 |
ctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttgttgatctttctcaaagtattc |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3403558 |
ctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttgttgatctttctcaaagtattc |
3403657 |
T |
|
| Q |
344 |
atagataggtattccatgaactttctcgaatacgtttatctctg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3403658 |
atagataggtattccatgaactttctcgaatacgtttatctctg |
3403701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 44 - 375
Target Start/End: Original strand, 3369730 - 3370061
Alignment:
| Q |
44 |
aaataatcttggaaaagtggtcactaaatataaaatttgagatgtgatcaaataataacctggaaagggtggtgcatgttcaatcacttgtgggagatca |
143 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||| ||||| |||||| || ||| || |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
3369730 |
aaataatcttgagaaagtggttactaaatacaaaatttaagatgctatcaaacgattaccatgatagggtggtgcattttcaatcacttgtgggaggtca |
3369829 |
T |
|
| Q |
144 |
aaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttcatatc |
243 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| | ||||||| |
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|
| T |
3369830 |
aagttgattgcctttattgatggatatttggatataatggctttgagactttgtccatttccacctcctacatcaattagggttgatatatcctcatatc |
3369929 |
T |
|
| Q |
244 |
ctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttgttgatctttctcaaagtattc |
343 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | || |||||| | |||||||| ||||||||||| || |||||||||| ||||||||| |||||| || |
|
|
| T |
3369930 |
ctttgtatatttcaaggattgttttcatgtggagtgtacatgtatcagtcattgatttgttaaatatgtggtttatttgtggatctttcttaaagtactc |
3370029 |
T |
|
| Q |
344 |
atagataggtattccatgaactttctcgaata |
375 |
Q |
| |
|
| |||||| ||||||||||||||||| ||||| |
|
|
| T |
3370030 |
aaagatagatattccatgaactttcttgaata |
3370061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 3360255 - 3360521
Alignment:
| Q |
101 |
acctggaaagggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtcca |
200 |
Q |
| |
|
||||||||| ||||||| || |||||| |||||||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||| ||| || |
|
|
| T |
3360255 |
acctggaaaaggtggtgtattttcaattacttgtggaaggtcaaaattgattgcctttattgatgggtatttagagataatcattttgagactttgccct |
3360354 |
T |
|
| Q |
201 |
tttccacctcctacatcaaccagtgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctt |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||| ||| ||||| | ||||||| || |
|
|
| T |
3360355 |
gttccaccacctacatcaaccagtgttgatattccctcaaatccttggtatatttcaaggattcttttcatgtgagttgtgcatgtatccgtcattgatt |
3360454 |
T |
|
| Q |
301 |
tgttaaataagttgtttatttgttgatctttctcaaagtattcatagataggtattccatgaacttt |
367 |
Q |
| |
|
||||||||| | ||||| ||| ||||||||| |||||||||| | || | ||||||||||||||| |
|
|
| T |
3360455 |
tgttaaatatttcatttatctgtggatctttcttaaagtattcaaacattgttattccatgaacttt |
3360521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 123 - 375
Target Start/End: Original strand, 3298906 - 3299158
Alignment:
| Q |
123 |
tcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaacca |
222 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3298906 |
tcaatcacttgtggaaggtcaaaattgattgcctttattgatgggtatttggcaataatcaacttgagagtttgtccattgccacctcctacatcaacca |
3299005 |
T |
|
| Q |
223 |
gtgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataagttgtttatttg |
322 |
Q |
| |
|
||||||| || ||| ||||||||||||| ||||||||| |||||||||||| ||||| | |||||||| |||||||||||| | ||||||||| |
|
|
| T |
3299006 |
aagttgataccccctcaaatcctttgtatatgtcaaggattcttttcatgtgaacattgcatgtatcagtcattgatttgttaaataactggtttatttg |
3299105 |
T |
|
| Q |
323 |
ttgatctttctcaaagtattcatagataggtattccatgaactttctcgaata |
375 |
Q |
| |
|
| |||||||| ||||||| ||||| | | |||||||| |||||||| ||||| |
|
|
| T |
3299106 |
tggatctttcccaaagtactcatactttgatattccattaactttcttgaata |
3299158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 375
Target Start/End: Original strand, 3349065 - 3349339
Alignment:
| Q |
101 |
acctggaaagggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtcca |
200 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||| || || |||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
3349065 |
acctggaatgggtgatgcattttcaatcacttgaggaaggtcaaaattgattcccttaattgatggatatttttcaataatcattttgagagtttgtcca |
3349164 |
T |
|
| Q |
201 |
tttccacctcctacatcaaccagtgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaa--ttgcacatgtttgagtcattgc |
298 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| || |||||||||||| ||||||| ||| ||||||||||| ||| ||| || |||||||| |
|
|
| T |
3349165 |
tttccacctccaatatcaaccaaagttgatattccctcgtatcctttgtatttttcaagaatttctttcatgtgaattttggtcatatt--agtcattga |
3349262 |
T |
|
| Q |
299 |
tttgttaaataagttgtttatttgttgatctttctcaaagtattcatagataggtattccatgaactttctcgaata |
375 |
Q |
| |
|
|||||| |||| | |||||||||| |||||||| ||||||| ||||| | | |||||||| |||||||| ||||| |
|
|
| T |
3349263 |
tttgttgaatatttggtttatttgtggatctttcccaaagtactcatactttgatattccattaactttcttgaata |
3349339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 375
Target Start/End: Complemental strand, 23993649 - 23993385
Alignment:
| Q |
111 |
ggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctc |
210 |
Q |
| |
|
|||||||||| |||||| ||||| || ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
23993649 |
ggtggtgcattttcaatgacttgaggaagatcaaaattgattccctttattgatggatatttggcaataatagttttgagactttgtccactgccacctc |
23993550 |
T |
|
| Q |
211 |
ctacatcaaccagtgttgatattccttcatatcctttgtatatttcaaggattattttcatgtgaattgcacatgtttgagtcattgctttgttaaataa |
310 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| ||||||||| ||||| |||| || | || | || ||||| | |||||||| ||||||||||| |
|
|
| T |
23993549 |
ctacatcaaccatagttgatactccctcaagacctttgtattcttcaacgatttttctaatctcaacattgcatgtatcagtcattgatttgttaaatat |
23993450 |
T |
|
| Q |
311 |
gttgtttatttgttgatctttctcaaagtattcatagataggtattccatgaactttctcgaata |
375 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||| |||| ||| |||| |||||||| ||||| |
|
|
| T |
23993449 |
tttgtttatttgtgaatcttttccaaagtactcatacatagatatcccattaactttcttgaata |
23993385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 20720368 - 20720475
Alignment:
| Q |
111 |
ggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctc |
210 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| || || |||| |
|
|
| T |
20720368 |
ggtggtgcattttcaatcacttgtggtaggtcaaaattgattgcctttattgatgggtatttggcaataatcatttagagactttgtccgttgcctcctc |
20720467 |
T |
|
| Q |
211 |
ctacatca |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
20720468 |
ctacatca |
20720475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 43365238 - 43365078
Alignment:
| Q |
111 |
ggtggtgcatgttcaatcacttgtgggagatcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctc |
210 |
Q |
| |
|
|||||||||| |||||| ||||| || |||||||| || ||| |||||||| |||| ||||||||||| |||| || ||| | ||||| ||||||||| |
|
|
| T |
43365238 |
ggtggtgcattttcaataacttggggcagatcaaagttaattccctttattaatgggtatttggatattatcaattcaagatttcgtccacttccacctc |
43365139 |
T |
|
| Q |
211 |
ctacatcaaccagtgttgatattccttcatatcctttgtatatttcaaggattattttcat |
271 |
Q |
| |
|
| |||||||||| |||||||||||| ||| |||| ||||||||||||| ||| ||||||| |
|
|
| T |
43365138 |
caacatcaaccaatgttgatattccctcaaatccagtgtatatttcaagcattcttttcat |
43365078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 6283069 - 6283185
Alignment:
| Q |
140 |
atcaaaattgattgcctttattgatggatatttggatataatcattttgagacattgtccatttccacctcctacatcaaccagtgttgatattccttca |
239 |
Q |
| |
|
||||||||| || ||||||| || ||||| || || || ||||| || | || ||| ||| |||| ||||| |||||||||| | |||||||||||||| |
|
|
| T |
6283069 |
atcaaaattaatgccctttatagaaggatacttagagattatcatattcaaactttgcccaattcctcctccaacatcaaccaatattgatattccttca |
6283168 |
T |
|
| Q |
240 |
tatcctttgtatatttc |
256 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
6283169 |
aatcctttgtatttttc |
6283185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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