View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_high_16 (Length: 330)
Name: NF8300_high_16
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 9380852 - 9381147
Alignment:
| Q |
16 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
115 |
Q |
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| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
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| Q |
116 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
9381051 |
T |
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| Q |
216 |
gccacagccacacttcttgttccacttatgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaact |
311 |
Q |
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| T |
9381052 |
gccacagccacacttcttgttccacttttgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaact |
9381147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 55738865 - 55739144
Alignment:
| Q |
16 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
115 |
Q |
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|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
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| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
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| Q |
116 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgat |
215 |
Q |
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||||| ||||| |||||| |||||| ||||| |||||||||| |||||| |||||||| || |||| ||||| ||||||||||||||||| |||||| |
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| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgat |
55739064 |
T |
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| Q |
216 |
gccacagccacacttcttgttccacttatgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccc |
295 |
Q |
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||||| || |||||| || |||||||| | ||||| ||||| | | ||||||||| ||||| ||||||||||||||||| |
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| T |
55739065 |
gccactgctacacttattattccacttctatatcatatagctaggactatgcatgtacatcctcttcttcttatgatccc |
55739144 |
T |
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