View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_high_18 (Length: 274)
Name: NF8300_high_18
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 35108810 - 35108559
Alignment:
| Q |
7 |
gagaagaagaggaagagaaagcttctctcttggatttgcatgatttaccattggattgtattcttgaaaaactttcacctagtgaattatgcaatgtggc |
106 |
Q |
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| T |
35108810 |
gagaagaagaggaagagaaagcttctctcttggatttgcatgatttaccattggattgtattcttgaaaaactttcacctagtgaattatgcaatgtggc |
35108711 |
T |
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| Q |
107 |
tcaagtgtgtaaatctcttagggaaaaatgtagaagtgattatttatgggagaaacatatgaagatgaaatggggcaaaattttaggtgattctgcttat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35108710 |
tcaagtgtgtaaatctcttagggaaaaatgtagaagtgattatttatgggagaaacatatgaagatgaaatggggcaaaattttaggtgattctgcttat |
35108611 |
T |
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| Q |
207 |
agacaatggaaatgttatgtagcttccaaaagcatagagaagaattcaaatc |
258 |
Q |
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| T |
35108610 |
agacaatggaaatgttatgtagcttccaaaagcatagagaagaattcaaatc |
35108559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 35068377 - 35068210
Alignment:
| Q |
7 |
gagaagaagaggaagagaaagcttctctcttggatttgcatgatttaccattggattgtattcttgaaaaactttcacctagtgaattatgcaatgtggc |
106 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35068377 |
gagaagaagaggaagataaagcttctctcttggatctgcatgatttaccattggattgtattcttgaaaaactttcacctactgaattatgcaatgtggc |
35068278 |
T |
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| Q |
107 |
tcaagtgtgtaaatctcttagggaaaaatgtagaagtgattatttatgggagaaacatatgaagatga |
174 |
Q |
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||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
35068277 |
acaagtatgcaaatctcttagggaaagatgtagaagttattatttatgggagaaacatatgaagatga |
35068210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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