View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8300_high_19 (Length: 267)
Name: NF8300_high_19
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 1492341 - 1492091
Alignment:
| Q |
2 |
acatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgact |
101 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||| ||| || | ||||||||||| ||| | ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
1492341 |
acatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctacaccgcttgtggtgcaaacgattaagtgagtaatctttgact |
1492242 |
T |
|
| Q |
102 |
ttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgc |
201 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492241 |
ttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgc |
1492142 |
T |
|
| Q |
202 |
catgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492141 |
catgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
1492091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1505151 - 1504903
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || || ||||||||||||| ||| || ||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
1505151 |
cacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacaattaagtgagtaatctttgac |
1505052 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||| | |||||||||||||||||| | || | ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1505051 |
tttggctgaccccattcttttatagcttttacggcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtg |
1504952 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
1504951 |
ccatgtattcacaaacactgggattctcttttaaaatctcctctgttag |
1504903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1482367 - 1482128
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||| || || | ||||||||||| ||| || ||||||| |||| |||||| | ||||||||||| |
|
|
| T |
1482367 |
cacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggcatgtctacaccacttgtggtacaaaatattaagtgtgtaatctttgat |
1482268 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1482267 |
tttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtg |
1482168 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctc |
240 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||| |||||||| |
|
|
| T |
1482167 |
ccatgtattcgcatacactaggattttctttcaaaatctc |
1482128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1478173 - 1477937
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| || || | ||||||||||| ||| || ||||||| |||| ||| ||| | ||||||||||| |
|
|
| T |
1478173 |
cacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtctacaccacttgtggtgcaaaagatcaagtgtgtaatctttgat |
1478074 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
1478073 |
tttggttggccccattcttttatagctttcactgcagcctcctttcctagtctaggtacttctaccaccaccatgtcctgcctagcatccaatgacggtg |
1477974 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaat |
237 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| ||||| |
|
|
| T |
1477973 |
ccatgtattcacatacacttggattttctttcaaaat |
1477937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 1509297 - 1509053
Alignment:
| Q |
2 |
acatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgact |
101 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| ||| | |||||| ||| || ||| || ||||||| |||| |||||| | ||||||||||| | |
|
|
| T |
1509297 |
acatatgggtgaagacctaaaagtttggtaagttgataatgagctccagacatatcaacaccacttgtggtgcaaaagattaaatgtgtaatctttgatt |
1509198 |
T |
|
| Q |
102 |
ttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgc |
201 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||| | |||| || ||||| |||||||| | ||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
1509197 |
ttggctggccccattcttttatagccttcactgcaacctcttttcctagcctaggtacctttacaaccaccatgtcttgcctagcatccaatgatggtgc |
1509098 |
T |
|
| Q |
202 |
catgtattcacaaacattaggattctcttttaaaatctcctctgt |
246 |
Q |
| |
|
| | || |||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
1509097 |
cgtataagcacaaacattgggattctctttcaaaatctcttctgt |
1509053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 1499326 - 1499215
Alignment:
| Q |
89 |
gtaatctttgactttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcat |
188 |
Q |
| |
|
||||| |||||||| |||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||| ||| ||||||||| ||||||| |
|
|
| T |
1499326 |
gtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttccctagtctaggtatctctaccgccatcatgtcttgcctagcat |
1499227 |
T |
|
| Q |
189 |
ccaatgaaggtg |
200 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
1499226 |
ccaaagaaggtg |
1499215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 1486765 - 1486608
Alignment:
| Q |
80 |
attaagggagtaatctttgactttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtctt |
179 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||| ||||||||||||| | ||||| |||||| || ||||| ||||| || ||| |||||||||||||| |
|
|
| T |
1486765 |
attaagtgtgtaatctttgactttggttggccctattcttttatagctttcactgcagcctcatttcctagcctaggcacgtctcgcaccaccatgtctt |
1486666 |
T |
|
| Q |
180 |
gtctagcatccaatgaaggtgccatgtattcacaaacattaggattctcttttaaaat |
237 |
Q |
| |
|
| ||||||||||| ||||||| ||| || |||| ||||||||||||||| ||||| |
|
|
| T |
1486665 |
gcctagcatccaaagaaggtgtcatataagtgcaaaaattaggattctctttcaaaat |
1486608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5315285 - 5315034
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||| ||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5315285 |
cacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtcaacaccacttgtggtgcaaacgattaagtgagtaatctttgac |
5315186 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
5315185 |
tttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagggg |
5315086 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
5315085 |
ccatgtattcacaaacactaggattttctttcaaaatttcttctgttagata |
5315034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5310571 - 5310320
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
||||||||| ||||| || | |||||| ||||||| ||| || ||||||||||||| ||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5310571 |
cacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgac |
5310472 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
5310471 |
tttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaaggtg |
5310372 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5310371 |
ccatgtattcacaaacactaggattttctttcaaaatctcctctgttagata |
5310320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5302670 - 5302419
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||| || || | |||||||| ||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5302670 |
cacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgac |
5302571 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
5302570 |
tttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagggg |
5302471 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
5302470 |
ccatgtattcacaaacactaggattttctttcaaaatttcttctgttagata |
5302419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5284482 - 5284231
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||| || ||||||||||||| ||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5284482 |
cacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgac |
5284383 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
5284382 |
tttggttggccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaagggg |
5284283 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| ||||| || ||||||||||| |
|
|
| T |
5284282 |
ccatgtattcacaaacactaggattttttttcaaaatttcttctgttagata |
5284231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5289645 - 5289896
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
||||||||| |||||||| | |||||| ||||||| ||| || ||||||||||||| ||| || ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
5289645 |
cacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgac |
5289744 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
5289745 |
tttggttgaccccattcttttatagccttcactgcagcctcctttcctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaagggg |
5289844 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttagata |
252 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| ||||| || ||||||||||| |
|
|
| T |
5289845 |
ccatgtattcacaaacacttggattttctttcaaaatttcttctgttagata |
5289896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 46706936 - 46707184
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| || || ||||||||||||| ||| || | || || |||||||||||| | |||||||||||| |
|
|
| T |
46706936 |
cacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgac |
46707035 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
46707036 |
tttggttgaccccattcttttatagccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctggcatccaatgaaggtg |
46707135 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| |||||||||| |||||| |
|
|
| T |
46707136 |
ccatatattcacaaacactgggattctctttcaaaatctcctatgttag |
46707184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44128748 - 44128500
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || || ||||||||||||| ||| || ||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
44128748 |
cacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgac |
44128649 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44128648 |
tttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtg |
44128549 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44128548 |
ccatgtattcacaaacactaggattctctttcaaaatctcctctgttag |
44128500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44132953 - 44132705
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || || ||||||||||||| ||| || ||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
44132953 |
cacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgac |
44132854 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44132853 |
tttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtg |
44132754 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44132753 |
ccatgtattcacaaacactaggattctctttcaaaatctcctctgttag |
44132705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44141375 - 44141127
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || || ||||||||||||| ||| || ||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
44141375 |
cacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgac |
44141276 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44141275 |
tttggttgaccccattcttttatggccttcactgcagcctccttccctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtg |
44141176 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44141175 |
ccatgtattcacaaacactaggattctctttcaaaatctcctctgttag |
44141127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 24163743 - 24163986
Alignment:
| Q |
6 |
atgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgactttgg |
105 |
Q |
| |
|
||||||||||||||| |||||| ||||||| || || | |||||||| || ||| || || | || |||| |||||| | || |||||||||||||| |
|
|
| T |
24163743 |
atgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatctacaccacttatagtgcaaaatattaagtgtgtgatctttgactttgg |
24163842 |
T |
|
| Q |
106 |
tttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgccatg |
205 |
Q |
| |
|
|| ||||||||||||||||||| ||| | |||||||| |||||||| ||| | ||||| |||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
24163843 |
ttggccccattcttttatagccttcacggctgcctcctttcctagtcttggtgcctctactaccaccatgtcttgcctagtatccaaagaaggtgccata |
24163942 |
T |
|
| Q |
206 |
tattcacaaacattaggattctcttttaaaatctcctctgttag |
249 |
Q |
| |
|
|| || | |||||||||||||| |||||||| || ||||| |
|
|
| T |
24163943 |
taagtgcacaagttaggattctctttcaaaatctcttcggttag |
24163986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37863338 - 37863577
Alignment:
| Q |
1 |
cacatatgggcgaagacctacgagtttggtgagtttatagtctactccaggcatgtccacatcatttgtggttcaaacgattaagggagtaatctttgac |
100 |
Q |
| |
|
|||||| ||||||||||| | ||| || ||||| | |||||| | |||||||| |||||| || ||||||| |||| |||| |||||||||||||| |
|
|
| T |
37863338 |
cacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccacttgtggtgcaaaaaattagatgagtaatctttgac |
37863437 |
T |
|
| Q |
101 |
tttggtttaccccattcttttatagcctacactgtagcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
200 |
Q |
| |
|
|| |||| ||||||||| || ||||||| || |||||| || ||||| | |||||||| || |||||||| || ||||| |||||||| ||||||| |
|
|
| T |
37863438 |
ttaggttgaccccattccttgatagcctttgttgcagcctcttttcctagctttggtacttccacaaccaccatatcctgtcttgcatccaacgaaggtg |
37863537 |
T |
|
| Q |
201 |
ccatgtattcacaaacattaggattctcttttaaaatctc |
240 |
Q |
| |
|
|||| || ||||| | | |||||||||| || |||||||| |
|
|
| T |
37863538 |
ccatatactcacataaactaggattctccttcaaaatctc |
37863577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 37859448 - 37859542
Alignment:
| Q |
137 |
gcctccttccctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtgccatgtattcacaaacattaggattctcttt |
231 |
Q |
| |
|
||||| || |||||||| ||||| || || ||||||||||||||||| ||||||||||||||||||||||| || || ||| | ||||||||||| |
|
|
| T |
37859448 |
gcctcttttcctagtcttggtacctccacaaccaccatgtcttgtcttgcatccaatgaaggtgccatgtactcgcatacacttggattctcttt |
37859542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 35250825 - 35250738
Alignment:
| Q |
161 |
tctaccaccaccatgtcttgtctagcatccaatgaaggtgccatgtattcacaaacattaggattctcttttaaaatctcctctgtta |
248 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| ||||||||||| |||| | ||| ||||| ||||| | ||| |||||||||| |
|
|
| T |
35250825 |
tctactaccaccatatcttgtcttgcatccaatgatggtgccatgtaagcacacatattgggattttctttcagaatttcctctgtta |
35250738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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