View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_high_24 (Length: 235)
Name: NF8300_high_24
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 30069891 - 30070085
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
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||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||||||| | ||| | |||||||||||| |||| |||||||||||||| |
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| T |
30069891 |
ttattctgagctgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatga |
30069990 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
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||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30069991 |
cgagtctgtcaagtttccatcaggtttcttgcaaaggtttatcaatctcgaaaaccttaagttgacatgtagttccttctcagagattttctcga |
30070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 30024771 - 30024965
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
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||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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| T |
30024771 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30024870 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
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|||| |||||||||||||||| |||||| |||||| |||||||||| || ||| |||| ||||||||||||||||| || | |||||||||| |
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| T |
30024871 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcga |
30024965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 30117351 - 30117157
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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| T |
30117351 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30117252 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
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|||| |||||||||||||||| |||||| |||||| |||||||||| || ||| |||| ||||||||||||||||| || | |||||||||| |
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| T |
30117251 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcga |
30117157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 30132108 - 30131914
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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| T |
30132108 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30132009 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| |||||||||| || ||| |||| ||||||||||||||||| || | |||||||||| |
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| T |
30132008 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcga |
30131914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 30237357 - 30237163
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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|
| T |
30237357 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30237258 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| |||||||||| || | | |||| | ||||||||||||||||| || | |||||||||| |
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|
| T |
30237257 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcatagagcttattgtgacatgtagttccttcacatacattttctcga |
30237163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 30035926 - 30035732
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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|
| T |
30035926 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30035827 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| |||||||||| || || |||| ||||||||||||||||| || | |||||||||| |
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|
| T |
30035826 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcga |
30035732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 30230064 - 30229870
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||||||||||||||||||| ||||| |
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|
| T |
30230064 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30229965 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctcga |
209 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||| |||||||||| || || |||| ||||||||||||||||| || | |||||||||| |
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|
| T |
30229964 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcga |
30229870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 30792409 - 30792600
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||| |
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| T |
30792409 |
ttattctgaattgcaaggacgtcaccatgttatgcaacggtcaacttaatgatgagctgatctacacagtaaaagctcttcgcctacgatgttttcatga |
30792508 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttct |
206 |
Q |
| |
|
| |||| ||||||||||| |||||| ||||||| |||||| | | ||| | |||| || ||||||||||||||||||||||||||| |
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|
| T |
30792509 |
cacgactgaaaaatttccatctggtttcctccaaagatttatccacctggaatatcttaaggtgtcatgtagttccttctcagagattttct |
30792600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 30182479 - 30182301
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||| || ||||||| | | ||||| || ||||||||||||| || |
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|
| T |
30182479 |
ttattctgaacagcaaggatgtcaccatggcatgcaatggtcaccttaatgatgagcttatcaacacagtaacagctctttgcttgcgatgttttcacga |
30182380 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttc |
193 |
Q |
| |
|
|| |||||| || |||||||| |||||| |||||||||| |||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
30182379 |
tgtgtctgaaaagtttccatctggtttcctccaaaggttcatcaatctcaaaaaccttaaggtgacatgtagttccttc |
30182301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 30253792 - 30253982
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
||||||| ||| | ||||| ||||| ||||||||||||||||||| ||| ||||| ||||||| || ||| |||||||||| |||||||||||| | |
|
|
| T |
30253792 |
ttattctaaacagtaaggatgtcacaatgttatgcaatggtcaacataacaatgagacaatctacacggtaaaagctcttcgcctacgatgttttcataa |
30253891 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| | || |||||||||||| || |||||||| |
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|
| T |
30253892 |
tgagtctgacaaatttccatcaggtttcctccaaaggtttatcaatctcaaaaaccttaagataacttgtagttccttcacaaagattttc |
30253982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 30281363 - 30281541
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||| |||||||||||| || | |||||| ||||||| |||||||| |||||||||||||||| |
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|
| T |
30281363 |
ttattctgaattgcaaggatgtcaccatgttatgcagcggtgaacttaatgatgggcctatctacaaagtgaaagctcttcgcttgcgatgttttcatga |
30281462 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttc |
193 |
Q |
| |
|
||| |||| ||||||| || | |||||| | ||||| ||||||||| || ||||||||| ||||||||||||||||| |
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|
| T |
30281463 |
tgaatctgtcaaattttcaactggtttccttcaaagatttatcaatctcaaaaaccttaaggtgacatgtagttccttc |
30281541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 30176665 - 30176857
Alignment:
| Q |
15 |
ttattctgaactgcaaggacgtcaccatgttatgcaatggtcaacttaatgatgagcttctctacacagtgaaatctcttcgcctgcgatgttttcatga |
114 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| | |||||||||||| | ||| | |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30176665 |
ttattctgaattgcaaggatgtcaccatgttatgtagcggtcaacttaataacgagtctatctacacagtgaaagctcttcgtctgcgatgttttcatga |
30176764 |
T |
|
| Q |
115 |
tgagtctgacaaatttccatcaggtttcttccaaaggtttatcaatgtcgaaaaccttagtctgacatgtagttccttctcagagattttctc |
207 |
Q |
| |
|
|||||||| || |||||| | |||||| ||||||| ||||||||| | ||||| |||| || | |||||||| ||| | ||||||||||| |
|
|
| T |
30176765 |
cgagtctgagaagtttccaactggtttcctccaaagatttatcaatcttgaaaatcttaaagtgtcttgtagttctttcactgagattttctc |
30176857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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