View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8300_high_3 (Length: 649)

Name: NF8300_high_3
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8300_high_3
NF8300_high_3
[»] chr3 (1 HSPs)
chr3 (1-632)||(55187345-55187977)


Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 55187345 - 55187977
Alignment:
Q  1 acaatcctgggacataaaggaaactttacaaaagtaataaaacagtattaatctttgtatattcccttaaactggcacctaaaaacaagattgagctttc 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55187345 acaatcctgggaaataaaggaaactttacaaaagtaataaaacaatattaatctttgtatattcccttaaactggcacctaaaaacaagattgagctttc 55187444  T
Q  101 catttcaaagttttgtataaaa-aagaccaatgtaagacttatagattggcagacagttttacttctagtaataaacatggcgtgctctgtaaaaatggc 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55187445 catttcaaagttttgtataaaaaaagaccaatgtaagacttatagattggcagacagttttacttctagtaataaacatggcgtgctctgtaaaaatggc 55187544  T
Q  200 ataacaagaaagtgagaaacccagcatggcaagcatgttagagctgatagtgctcatgattaacagatgtgaattatgcaaagtgaattctgattcatag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55187545 ataacaagaaagtgagaaacccagcatggcaagcatgttagagctgatagtgctcatgattaacagatgtgaattatgcaaagtgaattctgattcatag 55187644  T
Q  300 attgcgaccaagctattgcaattccacagttaaataatgaaaataacaagatatgtgattaatttgcttacttatttattgccagtgtgcaagacatccc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55187645 attgcgaccaagctattgcaattccacagttaaataatgaaaataacaagatatgtgattaatttgcttacttatttattgccagtgtacaagacatccc 55187744  T
Q  400 atccgctcttttccctttgcaaactccataatcaacagaggtgcccatcttcataatttgattaggggagtatatactcaaagaaaaaccattacccttc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55187745 atccgctcttttccctttgcaaactccataatcaacagaggtgcccatcttcataatttgattaggggagtatatactcaaagaaaaaccattacccttc 55187844  T
Q  500 aaaaacaatacaaataaaaaagagatttcagaggcgattgtaaacttcggttgaaaaaatggaagcagatgataatgaataccttggcatccttgcggac 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55187845 aaaaacaatacaaataaaaaagagatttcagaggcgattgtaaactttggttgaaaaaatggaagcagatgataatgaataccttggcatccttgcggac 55187944  T
Q  600 agtagaattgaagagtgcaaagacggttccttc 632  Q
    |||||||||||||||||||||||||||||||||    
T  55187945 agtagaattgaagagtgcaaagacggttccttc 55187977  T

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