View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_high_6 (Length: 511)
Name: NF8300_high_6
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 6990309 - 6989852
Alignment:
| Q |
19 |
ctatccgtgcgcgtcattctcgttcttcttggttctcggtgtctcctcctacctttttccatcgccatcatgagcgatgaacaacgagaaccaccacagc |
118 |
Q |
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| T |
6990309 |
ctatccgtgcgcgtcattctcgttcttcttggttctcggtgtctcctcctacctttttccatcgccatcatgagcgatgaacaacgagaaccaccacagc |
6990210 |
T |
|
| Q |
119 |
cttctttctcgaggtaataccaccttttcttaaacattttgagttcatttctttatacgtgcatgcatgcatgcaacgttatttccatctcattcattaa |
218 |
Q |
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| T |
6990209 |
cttctttctcgaggtaataccaccttttcttaaacattttgagttcatttctttatacgtgcatgcatgcatgcaacgttatttccatctcattcattaa |
6990110 |
T |
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| Q |
219 |
ttaatatggtattatatctgtaatgtttccttaataataatctatattgattttacatgcaagtaagttgacnnnnnnnnnngcttaatgtaccattaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6990109 |
ttaatatggtattatatctgtaatgtttccttaataataatctatattgattttacatgcaagtaagttgac--ttttttttgcttaatgtaccattaat |
6990012 |
T |
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| Q |
319 |
ttttatacatgtgtattgattgatgttatgtacttgtgttgatatattttgtttcggacatgtctttgtgtatgtttggtttcggttccacgtttgaaaa |
418 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990011 |
ttttatacatgtgtattgattgatgttgtgtacttgtgttgatatattttgtttcggacatgtctttgtgtatgtttggtttcggttccacgtttgaaaa |
6989912 |
T |
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| Q |
419 |
atacaaaatcatttcgagattcatagaattgatttggacaaatttatatcctctcgagta |
478 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
6989911 |
atacaaaatcatttcgagattcatagaattgattttgacacgtttatatcctctcgagta |
6989852 |
T |
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