View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8300_low_1 (Length: 668)

Name: NF8300_low_1
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8300_low_1
NF8300_low_1
[»] chr2 (3 HSPs)
chr2 (15-581)||(43416303-43416869)
chr2 (234-444)||(43401755-43401966)
chr2 (577-650)||(43416210-43416283)
[»] chr4 (2 HSPs)
chr4 (18-72)||(32992636-32992690)
chr4 (15-72)||(53475539-53475596)
[»] chr3 (3 HSPs)
chr3 (15-73)||(32651435-32651493)
chr3 (15-60)||(3055015-3055060)
chr3 (15-72)||(5166449-5166506)
[»] chr1 (2 HSPs)
chr1 (15-72)||(31605846-31605903)
chr1 (15-67)||(9570664-9570716)
[»] chr8 (1 HSPs)
chr8 (15-71)||(18897187-18897243)


Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Complemental strand, 43416869 - 43416303
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctctggagacatggttagtccgattggtgtttgtgatacatagtg 114  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416869 tggtgttggtttgggaacttggagtgcgctcttcctcaacatctcaagttcgattctctggagacatggttagtccgattggtgtttgtgatacatagtg 43416770  T
Q  115 tgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagtatggcagcataagaattaggaataaaggaaagaatgcat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43416769 tgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagcatggcagcataagaattaggaataaaggaaagaatgcat 43416670  T
Q  215 aaagaatctcttgtgcaacacttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416669 aaagaatctcttgtgcaacacttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatg 43416570  T
Q  315 caatacaaaaattttatgtcaatcattgaaagttttccctcttatttttctttcctcttttggttacatgaatgattattcccctgtttgttattctatg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43416569 caatacaaaaattttatgtcaatcattgaaagttttccctcttatttttctttcctcttttggttacatgaatggttattcccctgtttgttattctatg 43416470  T
Q  415 tgcactatatcttactacagtttctagagtnnnnnnntattcaagaatgtagcacttgaggaggtgttgcatgtaattggccatgcaattgggaagctaa 514  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416469 tgcactatatcttactacagtttctagagtaaaaaaatattcaagaatgtagcacttgaggaggtgttgcatgtaattggccatgcaattgggaagctaa 43416370  T
Q  515 gaaccgtcgacttttgcttttctttagaagaatacatcaatttttgttgactcatattctcttataa 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416369 gaaccgtcgacttttgcttttctttagaagaatacatcaatttttgttgactcatattctcttataa 43416303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 234 - 444
Target Start/End: Complemental strand, 43401966 - 43401755
Alignment:
Q  234 acttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatgcaatacaaaaattttatgt 333  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||  ||||||| | ||||| | ||||||    
T  43401966 acttctttctcctatgataggagccaaatacacttatttttgtgattgca-tagaaagaaatgacgaggaccaccaagatgcagtgcaaaattcttatgt 43401868  T
Q  334 caatcattgaaagttttccctcttatttttcttt--cctcttttggttacatgaatgattattcccctgtttgttattctatgtgcactatatcttacta 431  Q
    |||||||||||| ||||||||||||| ||| |||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  43401867 caatcattgaaaattttccctcttatattttttttccctcttttggttacatgattgattattcccctctttgttattctatgtgcaccatatcttacta 43401768  T
Q  432 cagtttctagagt 444  Q
     ||||| ||||||    
T  43401767 tagtttatagagt 43401755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 577 - 650
Target Start/End: Complemental strand, 43416283 - 43416210
Alignment:
Q  577 tataacactaacatttcagattgaaagcgttatatgcgtgtctgtgtccggtgttgatgtttcatagtcgataa 650  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416283 tatagcactaacatttcagattgaaagcgttatatgcgtgtctgtgtccggtgttgatgtttcatagtcgataa 43416210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32992636 - 32992690
Alignment:
Q  18 tgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||| |||||||||||||||| |||  |||||||| |||||| ||||||||||    
T  32992636 tgttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctc 32992690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 53475596 - 53475539
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||||||||||||||||||||||| | | ||||||||  | ||| |||||||||||    
T  53475596 tggtgttggtttgggaccttggagtgtgatcttcctcaaagtttcagattcgattctc 53475539  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 32651493 - 32651435
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctct 73  Q
    |||| |||| ||||||||| |||||| |||  |||||||||||||| ||||||||||||    
T  32651493 tggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctct 32651435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 3055015 - 3055060
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctca 60  Q
    ||||||||| |||||||||||||| | |||| ||||||||||||||    
T  3055015 tggtgttggcttgggaccttggagcgtgcttctcctcaagatctca 3055060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 5166449 - 5166506
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||||| |||| |||||||||||| |||  ||||||||||||||  ||||||||||    
T  5166449 tggtgttgatttgagaccttggagtgtgctgctcctcaagatctcaggttcgattctc 5166506  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 31605903 - 31605846
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    ||||||||| ||||||||||| |||| |||  |||||||| |||||| ||||||||||    
T  31605903 tggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctc 31605846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9570664 - 9570716
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcga 67  Q
    ||||||||| ||| |||||||||||| ||| ||||||||| ||||| ||||||    
T  9570664 tggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcagattcga 9570716  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 18897187 - 18897243
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattct 71  Q
    |||||||||||||||||||| ||||| |||  |||||||| |||||  |||||||||    
T  18897187 tggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattct 18897243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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