View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_10 (Length: 458)
Name: NF8300_low_10
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 5266896 - 5266693
Alignment:
| Q |
38 |
ataataagcatttgttttgtcgaaattaagaagcacacaagagatatcaggcctttattcacacacagaaatgagatatcaggcctttctgtnnnnnnnn |
137 |
Q |
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| T |
5266896 |
ataataagtatttgttttgtcaaaattaagaagcacacgagagatatcaggcctttattcacacacagaaatgagatatcaggcctttctgtaaaaataa |
5266797 |
T |
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| Q |
138 |
nnnntatctaaccgatccaatatctattactttaggacaaaagaaaattctagtagtaagattcttctctaataaatttgttaatatattacttcaaacg |
237 |
Q |
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| T |
5266796 |
aaaatatctaaccgatccaatatctattactttaggacaaaagaaaattctagtagtaagattcttctctaataaatttgttaatatattacttcaaacg |
5266697 |
T |
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| Q |
238 |
attg |
241 |
Q |
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|||| |
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| T |
5266696 |
attg |
5266693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 5266518 - 5266434
Alignment:
| Q |
356 |
tattagaaggaatccctatggctatcaataaaaggtggaagaatgtgatttttgagactaatttgcatgctttgttagattacgt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266518 |
tattagaaggaatccctatggctatcaataaaaggtggaagaatgtgatttttgagactaatttgcatgctttgttagattacgt |
5266434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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