View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_11 (Length: 452)
Name: NF8300_low_11
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 33752313 - 33751890
Alignment:
| Q |
14 |
agatgaagcatcgattccattgactcgcaaagaggggtatcaggaccaaatttcaatacagtctcgttatccgtggatgtgtggtggtgattggatgagt |
113 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
33752313 |
agatgaagcattgattccattgattcgcaaagaggggtatcaggaccaaatttcaatacagtctcgttatccgtagatgtgtggtggtgatcggatgagt |
33752214 |
T |
|
| Q |
114 |
tagtactttctagcctcgtggttggaattccattcgtggttactataatttgccggtattgagaggctaggtgcttattcttccgcctcccagcacctat |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33752213 |
tagtactttctagcctcgtggttggaattccattcgtggttactataatttgccggtattgagaggctaggtgcttattcttccgcctcccagcacctat |
33752114 |
T |
|
| Q |
214 |
cggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33752113 |
cggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaac |
33752014 |
T |
|
| Q |
314 |
ttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaagagtttatcttgatctgtagtctccgtgttatcttcagtgggct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33752013 |
ttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaagagtttatcttgatctgtagtctccgtgttatcttcagtgggct |
33751914 |
T |
|
| Q |
414 |
tggaatttactattggctcctttt |
437 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33751913 |
tggaatttactattggctcctttt |
33751890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 2823737 - 2823652
Alignment:
| Q |
206 |
gcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacatt |
291 |
Q |
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||||||| ||| || |||||||| |||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||| |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacatt |
2823652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 387
Target Start/End: Original strand, 9423933 - 9424150
Alignment:
| Q |
170 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
269 |
Q |
| |
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|||||||| |||| ||||| ||| |||| ||||| ||||| | ||||| ||||||||| ||||||| ||||||||||| || || || ||| || | |
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| T |
9423933 |
tattgagaagctatctgcttgttcctccgtctccctgcaccgaaaggaacgtttctcatttttccaccggcagtccaatatctatgacatttccgacaaa |
9424032 |
T |
|
| Q |
270 |
aatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaa |
369 |
Q |
| |
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|||| ||||||||| ||||||||||||| |||||||||||||| || ||||| |||||||||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
9424033 |
aatgccgaggttgactgacattatagttattgaaataacaaaatttcgtgtcgaaactgttgcatcttggacattgaacaattttgtcgggtttctttaa |
9424132 |
T |
|
| Q |
370 |
gagtttatcttgatctgt |
387 |
Q |
| |
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|| ||| ||||||||||| |
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| T |
9424133 |
gactttgtcttgatctgt |
9424150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 387
Target Start/End: Original strand, 9431264 - 9431481
Alignment:
| Q |
170 |
tattgagaggctaggtgcttattcttccgcctcccagcacctatcggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcaga |
269 |
Q |
| |
|
|||||||| |||| ||| || |||||||| ||||| ||||| | | ||| ||||||||||||||||| |||||||| || || || || || | |
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| T |
9431264 |
tattgagaagctatgtgtttgttcttccgtctccctgcaccaacagcaacgtttctcattgttccaccgttggtccaatatctgtgacaactccgacaaa |
9431363 |
T |
|
| Q |
270 |
aatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaa |
369 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||| || ||||| |||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9431364 |
aatgccgaggttgattgacattgtagttgttgaaataacaaaattttgtgtcgaaacttttgcatcttggacattgaacaatcttgtctggtttctttag |
9431463 |
T |
|
| Q |
370 |
gagtttatcttgatctgt |
387 |
Q |
| |
|
|| ||| ||||||||||| |
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| T |
9431464 |
gactttgtcttgatctgt |
9431481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
218 |
acatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaacttgg |
317 |
Q |
| |
|
||||||||||| | ||| || |||||||| || || ||||| |||||||| ||||| |||||||| || ||||| ||||| ||| | || || || |||| |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
|
| Q |
318 |
tgtcc |
322 |
Q |
| |
|
||||| |
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|
| T |
3775600 |
tgtcc |
3775596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 339
Target Start/End: Complemental strand, 31771910 - 31771786
Alignment:
| Q |
215 |
ggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaact |
314 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| || ||||| || ||||| ||||| || |||||||| || |||||||| |||||||| | |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
|
| Q |
315 |
tggtgtcccaactgttgcatcgcgg |
339 |
Q |
| |
|
|||||||| || ||||||||||| |
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| T |
31771810 |
tggtgtccatgctattgcatcgcgg |
31771786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 383
Target Start/End: Complemental strand, 16950827 - 16950659
Alignment:
| Q |
215 |
ggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaact |
314 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||||||||| || || || ||||||||||| | ||||| || ||||| || ||||||||||| ||||||| |
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|
| T |
16950827 |
ggaacattcctaattactccaccagctgtccaatacctctgacaatttttgcagaaatgccttggttggttaacattgtaattgttgaaatagcaaaact |
16950728 |
T |
|
| Q |
315 |
tggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttctttaagagtttatcttgat |
383 |
Q |
| |
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| || ||| |||| ||||| || ||||| | | || ||||||||| ||||| || | ||| ||||||| |
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|
| T |
16950727 |
ttgtctccaaactattgcaacgaggacatggcagaaccttgtctggcttcttgaaaactttctcttgat |
16950659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 11624746 - 11624900
Alignment:
| Q |
214 |
cggaacatttctcattgttccaccagcagtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaac |
313 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| || || |||||||| || || || ||| | ||||| ||| |
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|
| T |
11624746 |
cggaacatttctcatggttccacctgcagtccaatatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaac |
11624845 |
T |
|
| Q |
314 |
ttggtgtcccaactgttgcatcgcggacactgaacaatcttgtctggtttcttta |
368 |
Q |
| |
|
|| |||||| |||||||| || |||||| | | | |||||||||||||||| |
|
|
| T |
11624846 |
tttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctggtttcttta |
11624900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 18230887 - 18230806
Alignment:
| Q |
241 |
agtccaatacctttggcagttcttgcagaaatgtcgaggttgattgacattatagttgttgaaataacaaaacttggtgtcc |
322 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||| || || ||||| || |||||||| | |||||||| || |||||| |
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|
| T |
18230887 |
agtccaatacctctggcagtttttgcagaagtgtcggggctgtttgacgttgtagttgttatagtaacaaaattttgtgtcc |
18230806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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