View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_12 (Length: 451)
Name: NF8300_low_12
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 23 - 437
Target Start/End: Complemental strand, 4948385 - 4947971
Alignment:
| Q |
23 |
aggtactactatggacagtgagattaaggttttctaatttgccaagcaccgtagcggcacgtccactgtgtttgtcacattgaatcttgattagtacatc |
122 |
Q |
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| T |
4948385 |
aggtactactatggacagtgagattaaggttttctaattggccaagcaccgtagcggcacgtccactgtgtttgtcacattgaatcttgatgagtacatc |
4948286 |
T |
|
| Q |
123 |
tttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattattagtgaagataatagatctcttcacttgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948285 |
tttgcttgaaactcttacttcgatttcaggaagtggttggttattggagttgctatcatcatcattattattagtgaagataatagatctcttcacttgg |
4948186 |
T |
|
| Q |
223 |
actgtggatccagcttttttgttgtcttcagcttgttcctccagtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacag |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948185 |
actgtggatccagcttttttgttgtcttcagcttgttcctccagtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacag |
4948086 |
T |
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| Q |
323 |
aagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctag |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948085 |
aagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctag |
4947986 |
T |
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| Q |
423 |
gttaagcttgcatgt |
437 |
Q |
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| T |
4947985 |
gttaagcttgcatgt |
4947971 |
T |
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