View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_13 (Length: 418)
Name: NF8300_low_13
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Original strand, 28438013 - 28438403
Alignment:
| Q |
12 |
ttggtggtggtggtgattcaagaaaggaaggtgcaagtgaatggttctttggtatgaattcttattcatctgtgatggctccttcaacaactactgatct |
111 |
Q |
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| T |
28438013 |
ttggtggtggtggtgattcaagaaaggaaggtgcaagtgaatggttctttggtatgaattcttattcatctgtgatggctcctacaacaactactgatct |
28438112 |
T |
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| Q |
112 |
tagtgtttgcattaatggtgatcatgatccaaatggaaataacaactggattaataatggtgttcatgcttggggtgatgtgcagcagcagcaaccatat |
211 |
Q |
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| T |
28438113 |
tagtgtttgcattaatggtgatcatgatccaaatggaaacaacaactggattaataatggtgttcatgcttggggtgatgtgcagcagcagcaaccatat |
28438212 |
T |
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| Q |
212 |
actgctttgccctaaagaggattggttaagtctatgtccggaagagcggtgagtttgacaaaattacagcggtgtatcgtgattctgttaaagttttaaa |
311 |
Q |
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| T |
28438213 |
actgctttgccctaaagaggattggttaagtctatgtccggaagagcggtgagtttaacaaaattacagcggtgtatcgtgattctgttaaagttttaaa |
28438312 |
T |
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| Q |
312 |
gtgtagcatttgtcatatcagaatggttcaccgtgattctgacaatccgaggaagaagtttatttaatcttgggaggaaaagtgaagaatg |
402 |
Q |
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| T |
28438313 |
gtgtagcatttgtcaaatcagaatggttcaccgtgattctgacaatccgaggaagaagtttatttaatcttgggaggaaaagtgaagaatg |
28438403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 25337605 - 25337656
Alignment:
| Q |
143 |
aatggaaataacaactggattaataatggtgttcatgcttggggtgatgtgca |
195 |
Q |
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| T |
25337605 |
aatggaaacaacaagtggattaatattgtt-ttcatgcttggggtgatgtgca |
25337656 |
T |
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