View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_14 (Length: 407)
Name: NF8300_low_14
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 233 - 396
Target Start/End: Complemental strand, 10935727 - 10935564
Alignment:
| Q |
233 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtcttttatacgaatcagaacctttccagcttcttctcgtgct |
332 |
Q |
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| T |
10935727 |
taacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtctttcatacgaatcagaacctttccagcttcttctcgtgct |
10935628 |
T |
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| Q |
333 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttctt |
396 |
Q |
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| T |
10935627 |
ttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttctt |
10935564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 398
Target Start/End: Complemental strand, 10960470 - 10960099
Alignment:
| Q |
32 |
atggatgcagagtaaagtagggctgatttgggaatttaattggacagagccagggcctctcaaataccctcagaagtagtatccgatataacacaacaaa |
131 |
Q |
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| T |
10960470 |
atgggtgcaaagtcaagtagggcagatttggcatcttaattggagagagtcagggtctctcaaagatcatcag--gtagcatccgttataacaccaaaaa |
10960373 |
T |
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| Q |
132 |
tctatggattactttaaacttttgagtaatatatatttttacgctgttgcaa-------ccataatatgttacatgatccgatctttactttgttaatgt |
224 |
Q |
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| T |
10960372 |
cctttggatcacattaaactgttgagtaatagatacctttacactgttgcaagttgcaaccataatatgttgcatgttccaaactttactttgttaacgg |
10960273 |
T |
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| Q |
225 |
ttcggctataacacattggccaaatgaatgactatagtatttgtatcttttcaacaacattacctgtcttttatacgaatcagaacctttccagcttctt |
324 |
Q |
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| T |
10960272 |
ttgggtttaaacacattggccaaatgaatgactatagtatagatatcttttcaacaacattacctatctttcatgcgaatcagaacctttccagcttctt |
10960173 |
T |
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| Q |
325 |
ctcgtgctttattcaccaccaattctctagcgtattctctcaagtcttgttgcattttttcaacagtttcttct |
398 |
Q |
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| T |
10960172 |
ctcgcgctttattttccaccaattttctagcgtagtctcttaagctttgttgcattttttcaacagtttcttct |
10960099 |
T |
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