View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8300_low_15 (Length: 372)
Name: NF8300_low_15
Description: NF8300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8300_low_15 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 47366797 - 47366454
Alignment:
| Q |
18 |
gtgtgtctacccactgctccatccagtacttccatcttccaatttttctttctgattcagctgatttctgaaaggatttctcagttagtatgaaaattag |
117 |
Q |
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| T |
47366797 |
gtgtgtctacccactgctccatccagtacttccatcttccaatttttctttctgattcagctgatttctgaaaggatttctcagttagtatgaaaattag |
47366698 |
T |
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| Q |
118 |
taagagtaaaactagtcttaagagcttcttaccctatggttatatgagtattcttttactctttctttcctaataatagcttctttcttgcttatgctag |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366697 |
taagagtaaaactaggcttaagagcttcttaccctatggttatatgagtattcttttactctttctttcctaataatagcttctttcttgcttatgctag |
47366598 |
T |
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| Q |
218 |
aagaatctacctctgtcttcattaaaatgctgtcatcccactttcgctcactgttttcgtccatctgtaaatattattaaatgttacatttctaactgta |
317 |
Q |
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| T |
47366597 |
aagaatctacctctgtcttcattaaaatgctgtcatcccactttcgctcactgttttcgtccatctgtaaat---attaaatgttacatttctaactgta |
47366501 |
T |
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| Q |
318 |
caagggatcagggttttcaaaaaatatcagtgaacattatctctgct |
364 |
Q |
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| T |
47366500 |
caagggatcagggttttcaaaaaagatcagtgatcattatctgtgct |
47366454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 16114 - 15976
Alignment:
| Q |
145 |
cttaccctatggttatatgagtattcttttactctttctttcctaataatagcttctttcttgcttatgctagaagaatctacctctgtcttcattaaaa |
244 |
Q |
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| T |
16114 |
cttactctatgattaaatgtgtattcttttattctttctctcttaataatgccttctttcttgatcatgcaagaagcatctacctcttccttcaataaag |
16015 |
T |
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| Q |
245 |
tgctgtcatcccactttcgctcactgttttcgtccatct |
283 |
Q |
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| T |
16014 |
tactgtcatcccactttctttcactgtttgagtccatct |
15976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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